Colletotrichum higginsianum: CH63R_04085
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Entry
CH63R_04085 CDS
T08176
Name
(RefSeq) WD repeat domain-containing protein
KO
K14555
U3 small nucleolar RNA-associated protein 13
Organism
chig
Colletotrichum higginsianum
Pathway
chig03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
chig00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
CH63R_04085
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
chig03009
]
CH63R_04085
Ribosome biogenesis [BR:
chig03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
CH63R_04085
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
Utp13
WD40_CDC20-Fz
WD40_WDHD1_1st
EIF3I
Beta-prop_EML_2
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_SCAP
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
WDR90_beta-prop_4th
Beta-prop_EIPR1
NBCH_WD40
Beta-prop_SPT8
WD40_MABP1-WDR62_1st
Beta-prop_IFT140_1st
Beta-prop_RIG_1st
Beta-prop_DCAF4
NQRA_N
Motif
Other DBs
NCBI-GeneID:
28863167
NCBI-ProteinID:
XP_018160306
UniProt:
H1VQ93
LinkDB
All DBs
Position
3:1707619..1710390
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AA seq
892 aa
AA seq
DB search
MASKQPFKTTFEPERVIRPIFTGGSVALDNGAKILATPLGEDAILTNPSNGKHLAKIEGD
GEQISTLSLTPSGSHLILCSRSLSMKIYALKTTEDGTIEAKLTRSLKPHGTPVVVLAVDR
TSTLLATGGTDGAIKVWDIAGGYVTHTFRGPSVLVSALHFFEVAARSGEGEAEKAGKKGK
KSKQAEEEVTATTNWRLVSGSQDGKVRVWDLHKRAVIANLDSHVSNVQGLDYSPEQHAIV
SASRDKTIIWWDAKSWKIRKVVPCLELVETVGFVDSGRLTYSAGAKGCLRIWDTDTGREL
TADQPAKAEAESIVSAVSHPELPFILCVQVDHTLALYKVPEKDAVQGSMLEPFRRISGTH
DSIIDLNYLLPDRSLLALATNAEDIRIVSVKDSESTYFGQDLALLKGHDDIIVSLDVDWS
GFWVATGAKDNTARLWRVDPANNSFTCYAAFTGHTESVGAVALPKQPPQESSAQFKDPLS
HPPPFLLTGSQDQTVKKWEIPREAQGRKGGSRAVFTRKAHDKDINAMDVHPTIQLFASSS
QDKMVKIWSVAEGEVQGILRGHRRGVWSVKFAPSGCPAIQGDEGQVAGKGVVLTGSADKT
VKIWSLNDYTCIRTFEGHSNSVLKVVWLNMPKPEGKGKKQVQFASAGSDGLVKVWDANSG
EAETTLDNHEDRIWALAVNSADNTIVSGDGDAIVTFWKDTTSESQAAATEAAQKLIEQEQ
ELENHIHHGSYREAIVLALQLNHPGRLLSLFTSVVTSTPELGSLCGLKAVDQVLATLSDE
QIFTLLLRLRDWNTNARTAAVAQRILWTLVRSYPASKFSNLSVKGARGQKSLKEVLNALK
VYTERHYRRTDELVDESYLVEYTLREMDSLAPAIEDVVMGDSVGVQGDVVMA
NT seq
2679 nt
NT seq
+upstream
nt +downstream
nt
atggcgagcaagcaacctttcaagacgactttcgagccggaacgagttatccgacctata
tttaccggcggctccgtcgctttggataatggtgccaagattttggccacgccgctcggc
gaggacgccattctgacgaacccctccaacgggaagcacctggcaaagattgaaggagat
ggcgaacaaatttcgaccctgagcctgacgccctccggctcccatctcatcctctgctcg
cgatccctctcgatgaagatatacgccttgaagacgaccgaagacggaacgattgaggcc
aagctgacacgctcgctaaagcctcacggaacccccgtcgtcgtcctcgctgttgaccga
acgagcaccctccttgcgaccggtggaacggacggagcgattaaggtctgggatattgct
ggtggttacgttacgcacacttttcgtggacccagcgttttggtgtcggccctacacttc
ttcgaggttgcggcgcgatcgggcgagggagaggctgagaaggccggaaagaagggcaag
aagtcgaaacaggcagaagaggaggtcaccgctaccaccaactggcgactcgtgtcgggc
agccaggacggcaaagtgcgggtgtgggatcttcacaagcgtgcggtcattgcgaatctt
gactcgcatgtttcgaatgttcagggtctcgattactccccggagcagcacgcgattgta
tcggcaagcagagacaagacaatcatctggtgggacgcaaagtcgtggaagattcgcaag
gtcgtgccctgccttgagcttgtcgagaccgtcggcttcgttgacagcggccgtctgacc
tactcggccggcgccaagggttgccttcgcatctgggacaccgacaccggccgcgagctg
acggcagaccagcctgcaaaggccgaggccgagagcatcgtcagtgccgtgtcgcatccc
gagctccccttcattctgtgcgtgcaggtggaccacactttggcgttgtacaaggtgcca
gagaaggacgctgtccaagggtccatgttggagcctttcaggcggatatccggtacacac
gactcgattattgacctaaactacctcctgcctgaccgctcgctcctcgcgctggcgacc
aatgccgaggacatccggattgtgtccgtcaaggactccgagtcaacatactttggccag
gacttggctttgctcaagggccacgacgacattatcgtttcgttggacgttgactggtcc
ggcttctgggttgctaccggtgcaaaggacaacaccgcccgcctttggcgcgtcgatcct
gcgaataactcttttacatgctatgctgcgttcaccggtcatacggaatcggtcggtgcc
gtggctctcccgaagcagcccccccaagaatcctcggcacagttcaaggatcctttgagc
catcccccgccttttcttctcaccggctcccaggaccagaccgtcaagaaatgggagatt
ccgagagaggcgcagggccgcaagggaggatctcgcgccgtctttaccagaaaagcgcac
gacaaggacatcaacgcaatggacgttcatcctaccattcagctcttcgcctcctcttct
caggacaagatggtcaagatttggtcagtggcggagggcgaagttcaaggtatcttacgc
ggtcaccgcagaggtgtgtggtcggtcaagttcgcgccctccggctgccctgcaatccaa
ggcgacgagggccaggtcgccggcaagggtgttgtcctcactggcagcgccgacaagaca
gtcaagatttggagtctgaatgactacacatgcatccgcacgttcgagggccactccaac
agcgtcctcaaagtcgtctggctcaacatgcccaagcctgagggcaagggtaagaagcag
gtgcagttcgccagcgcgggtagtgacggcctcgtcaaggtttgggatgccaactctggc
gaggcagaaacgacgctcgacaaccatgaggacagaatctgggcgcttgctgtgaactcg
gccgacaacaccatcgtgtctggtgacggcgacgcgatcgttacgttctggaaagacacc
acatccgaatcacaggccgcggctaccgaggctgcgcagaagttgatcgagcaagagcag
gaactcgagaaccacattcaccacggctcctaccgcgaagccatcgtgcttgctctgcag
ctcaaccatcccggacgcctgctgagcctgttcacgtccgttgtaacttctactcccgag
ctcggcagcctgtgcggtctgaaggctgtcgaccaggtcctagcgactctttctgatgaa
cagatcttcacgctcctgttgaggctacgtgactggaataccaacgcgcggacggccgcg
gtagcccagcgcatcctctggaccctcgtgcgcagctaccccgcgtccaagttctcgaac
ctctcggtcaagggcgcgcgtggtcagaagagcctcaaggaggtgcttaacgcgctcaag
gtatatactgagagacactaccggcggacggacgagctcgtggatgagagttatctggtg
gaatataccctgcgggagatggacagtctcgcgcctgcgattgaggatgtagtgatgggg
gattctgtgggggttcaaggggatgtcgtcatggcgtga
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