KEGG   Colletotrichum higginsianum: CH63R_04262
Entry
CH63R_04262       CDS       T08176                                 
Name
(RefSeq) Replication factor C subunit 4
  KO
K10755  replication factor C subunit 2/4
Organism
chig  Colletotrichum higginsianum
Pathway
chig03030  DNA replication
chig03410  Base excision repair
chig03420  Nucleotide excision repair
chig03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:chig00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    CH63R_04262
   03410 Base excision repair
    CH63R_04262
   03420 Nucleotide excision repair
    CH63R_04262
   03430 Mismatch repair
    CH63R_04262
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:chig03032]
    CH63R_04262
   03036 Chromosome and associated proteins [BR:chig03036]
    CH63R_04262
   03400 DNA repair and recombination proteins [BR:chig03400]
    CH63R_04262
DNA replication proteins [BR:chig03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   RFC (replication factor C)
    CH63R_04262
  DNA Replication Termination Factors
   ELG1-RFC complex
    CH63R_04262
Chromosome and associated proteins [BR:chig03036]
 Eukaryotic type
  Sister chromatid cohesion proteins
   CTF18-RFC complex
    CH63R_04262
DNA repair and recombination proteins [BR:chig03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   MMR (mismatch excision repair)
    RFC (replication factor C)
     CH63R_04262
  Check point factors
   HRAD17(Rad24)-RFC complex
    CH63R_04262
SSDB
Motif
Pfam: Rep_fac_C AAA DNA_pol3_delta2 AAA_14 AAA_16 nSTAND3 AAA_22 RCF1-5-like_lid RuvB_N Viral_helicase1 DNAX_ATPase_lid AAA_3 Rad17 Gp44_lid Mg_chelatase AAA_assoc_2 MeaB AAA_11 NTPase_1 DNA_pol3_gamma3 AAA_19 KTI12 AAA_5 AAA_24 AAA_18 ATPase_2 NB-ARC
Other DBs
NCBI-GeneID: 28863344
NCBI-ProteinID: XP_018160483
UniProt: H1W5Q9
LinkDB
Position
3:complement(2364834..2366030)
AA seq 361 aa
MPAQKMTTKPEEVGESSTSAAKKALTAASNGVPNYELPWVEKYRPVFLDDVVGNTETIDR
LKIIAKEGNMPHVIISGMPGIGKTTSVLCLARQLLGDSYKEAVLELNASDERGIDVVRNR
IKGFAQKKVTLPQGRHKLVILDEADSMTSGAQQALRRTMEIYSNTTRFAFACNQSNKIIE
PLQSRCAILRYARLTDEQVVKRLMQIIEAEKVEYSDDGLAALVFSAEGDMRQAINNLQST
FAGFGFVSGDNVFKVVDSPHPIKVQAMLKACYEGNVDSALDSLRELWDLGYSSHDIISTM
FKVTKTIPTLSEHSKLEFIKEIGFTHMKILEGVQTLLQLSGCVARLCKINMDPKKFEVVS
R
NT seq 1086 nt   +upstreamnt  +downstreamnt
atgcccgcccagaagatgactacaaagccggaggaggttggcgagtcctcaacatctgct
gcgaagaaggcgctgacggcggcgtcaaacggtgtccccaattatgagcttccttgggtc
gaaaaataccgtcccgtcttcctcgatgatgttgtcggaaacaccgagacgattgatcgg
ctaaaaatcattgcgaaggagggaaacatgccgcacgtcatcatttccggcatgcctggt
atcggaaaaaccacaagtgtgctctgccttgcgaggcaactactgggagattcctacaag
gaggctgttctagaactcaatgccagtgacgagagaggtatcgatgtcgtccgcaatcgc
atcaagggttttgcccagaagaaggtcaccctgccccagggccggcacaagctcgtgatc
ctagatgaggccgacagtatgacctcaggcgcccagcaggccctccgccgaacgatggag
atttactccaacacgacgcgcttcgccttcgcctgtaatcagtccaacaagatcatcgag
ccactgcaatcgcgatgcgccattctccgatacgcccggctcacggacgagcaggtggtc
aagcgtctgatgcagatcattgaggccgagaaggtggaatacagcgacgacgggctggct
gcgctcgtcttcagcgccgagggcgacatgcgacaggccatcaacaacttgcagtcgacc
tttgccggctttggcttcgtgtcgggcgacaacgtcttcaaagtggtggactcaccacac
cccatcaaagtccaggccatgctcaaggcgtgctacgagggcaacgtggactcggcgctc
gacagcctgcgcgagctatgggacctgggatactcgagtcacgacatcatcagcaccatg
ttcaaggttaccaagacgatcccgacgctgagcgagcactcgaagctagagttcatcaag
gagattggcttcacgcatatgaagattctggagggagtgcagacgctgttgcagttaagc
ggttgcgtcgcgaggctgtgcaaaatcaacatggatccgaagaagtttgaagtggtttca
agatga

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