Colletotrichum higginsianum: CH63R_04540
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Entry
CH63R_04540 CDS
T08176
Name
(RefSeq) MIF4G domain-containing protein
KO
K14327
regulator of nonsense transcripts 2
Organism
chig
Colletotrichum higginsianum
Pathway
chig03013
Nucleocytoplasmic transport
chig03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
chig00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
CH63R_04540
03015 mRNA surveillance pathway
CH63R_04540
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
chig03019
]
CH63R_04540
Messenger RNA biogenesis [BR:
chig03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
CH63R_04540
mRNA cycle factors
P-body specific factors
CH63R_04540
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
CBP4
FliD_C
Motif
Other DBs
NCBI-GeneID:
28863622
NCBI-ProteinID:
XP_018160761
UniProt:
H1UZX7
LinkDB
All DBs
Position
3:3358279..3362301
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AA seq
1220 aa
AA seq
DB search
MDRARKRELRSLNTRAWDGDHDVFAVSKSLDSSLKKNTAFIKRLRTAISAATLNTFLQEI
RTLSLHKYLSEIVSACYEGLCRLKSPGEIEAGVEIVSALHQRFGSSEFTEYLGWLLGKGM
ATPDKSLLKSLAPEVREREEKERLTRQRVLLRVVTELWLVDVLRTLDDVTRPDDATKGAT
GKVAELKPRAQVNKSGAAEPFPLEVLKDLLGHDREHVNLPLLVIFVKAFSWDILGVKSSA
AEGRKTVEEDGATKTANGTAQGDGGGDDQAGDNDGQPFTPPELQEKFKTILKKYFEDVKS
HVVRDQKSIHSQARRNAEAYVKSGEVFEDRQANFEKQLKAQERLVANAQAIADAIGADMP
DLKESDDSLANTNGSIGLVKAGDYLRGLGDGAGIWEDEDERRFYENLVDLKGKVPGILLD
DGKKKKPDNEEQVGKKIDLADAPDAPKAPDVGEDQSTSIANKTIGAQVDAVLARLPDLTN
KDVIDQAAIDFCYLNSKASRNRLIKALTEVPKGRGDLLPSWSRLAATLGRYMPDIPKGLV
DYLDAEFRSLQRRKDKDFLGQVRLSNIRYLAELTKFGIVPEHVVFHCLKVSLDDFSRMNI
EIICNLLENCGRYLLRNPETSPRMATFLETLQRKKSVQHIGQAERMLIENAVYYVDPPDR
PAIQQKERTPMELFIRKLIYMDMTKRNYSKILKQIRRLHWEEAEVVGILEKVFSKPGKVK
YGNIHLLAILLSALYRYHPAFVVRVIDNVMESICFGLEQNDFKFYQRRISEVKYIGELYN
YRMVEHPVIFDTMYKIMTFGHGGPPIPGRLNHFDLPDDFFRIRLIATILETCGMYFAKGA
AGKKLDYFLSFFQYYIYTKQSLPMDIEFIVQDTFALTRPQWKLASNLEEASKAFQLAIAQ
DQKVSGADKTLEVDDASIGSSSDDEDGDEHLPEAEADEEESGSDDEGAEDHDVDMSHADS
DSEDEAIVVTRQQERIDPEAEAEFEREYAKMMAESLESRKFERKPLFDVPLPVRGKSKET
ATGSEPVETGAPTASTTMAFSLLTKKGNRQQTRTVELPSDSTFAVAMKTQQQAEREEQQR
IKNLVLNYDLRENEDPDGNDRLTLLQSNPNVHNAQAGHEKPTSYHHNRPDRGKDRGGQRV
RKLQLSDVDWYESSIKRGSGFARAAALDFNPDVESGNDAGQSATPTHQHGIAYKRCMPVM
GSASRLEVRKEQPRRVRKYQ
NT seq
3663 nt
NT seq
+upstream
nt +downstream
nt
atggatcgtgcaaggaagcgcgagttgcgctccctgaacactcgcgcctgggatggcgac
cacgatgtgttcgccgtcagcaagtcgctcgattcatccctgaagaagaacaccgctttc
atcaagcgactccgaaccgccatctctgccgccactctcaacaccttcctacaagagatc
cgcacccttagcctccacaagtacctctccgagattgtctccgcttgctacgaaggcctc
tgcaggctcaagtcccccggcgagatcgaggccggcgtcgagattgtcagcgctctgcac
caacgcttcggctccagcgagttcacggagtacttgggatggctacttggcaagggaatg
gcaacacctgacaagagcttgctcaagtcacttgcccccgaggtccgcgagagggaggag
aaagagcgtttgacgcgccagcgagtgctcttgcgtgtcgttactgaactttggctcgtt
gatgttctccgaaccctcgatgatgttacacgacccgacgatgccaccaaaggcgccaca
ggcaaggtggccgagctgaagcccagggctcaagttaacaagagcggcgccgccgagccc
tttcccctcgaggttctcaaggatttattgggtcatgacagggagcacgtcaacttgccg
ctgctcgtcattttcgtcaaggctttcagttgggatattctgggtgttaagtcctcggcg
gccgagggtcgcaagacggtagaggaggatggtgcaaccaagacggccaacggcaccgca
cagggggacggcggcggcgatgaccaggccggcgataacgacggccaaccgttcacacct
cccgagctccaggaaaagttcaagaccatcctgaagaaatatttcgaggatgtcaagagt
cacgtcgtccgagaccagaaatccatccactcccaagctcgacgaaacgccgaggcttac
gtaaagtccggcgaagtcttcgaggatcggcaagcgaacttcgagaagcagctcaaggcc
caggagcggcttgtggcaaatgcccaggccatcgcggatgctattggcgccgacatgcct
gatctgaaggaaagcgacgactcgctagcgaacaccaacggttccatcggcttggtcaag
gctggcgattatctgcgaggcctcggtgacggtgctggaatttgggaagatgaagacgag
cgacgcttttacgaaaacctggtcgatctgaagggcaaggttccgggaatccttctcgac
gacggcaagaaaaagaaaccggacaatgaagagcaagtcggcaaaaaaatcgacctggca
gatgcccctgacgcaccaaaggctcctgacgtgggtgaagaccagtccacttccatcgct
aataagacgattggtgcccaggtcgatgctgtgctagctcggttgccagacctcaccaac
aaggatgtcatagaccaagccgccatcgacttctgctatttgaactcgaaggcctctcgt
aacaggctgattaaagctttgactgaggttcctaagggtcgaggcgatctcctgccatca
tggtcgagacttgccgcaactttgggccgatacatgccggacattcccaagggtcttgtt
gattatctcgacgcggaattccgcagcctccagagacgaaaggacaaggactttctcggt
caggttcgattgagcaacatccggtacctcgccgaactgaccaagtttggcatcgtgccg
gagcatgtggtgttccactgtctcaaggtcagcctggacgatttttcaaggatgaacatt
gaaatcatttgcaatctcttggagaactgtgggcgttaccttctgcggaacccggagacc
tcgccgcgcatggcgacttttctcgagacgttgcaacgcaagaagtctgtccagcacatt
gggcaggccgagcgcatgctcatagaaaatgctgtctactacgtcgaccctcctgatcgg
cccgctatccagcaaaaggagcggacgcccatggagctgttcatccgcaagttgatctac
atggacatgactaagcgtaactacagtaagatcttgaagcagattcgcaggcttcactgg
gaagaggctgaggtcgtcggtatcctggagaaggtattttccaagcctggtaaagtcaaa
tatggcaacattcacctccttgccatcctcctcagcgcactctaccggtaccacccggct
tttgtggtcagagtcatcgacaacgtcatggaatccatttgtttcggcctggagcagaat
gacttcaagttctaccaacgtcgtatctccgaagtcaagtacattggtgagctctacaac
tatagaatggtcgagcatccagtcattttcgacaccatgtacaaaatcatgacattcggc
catggcggtcctcctatccccggtcgactgaaccacttcgacctgcccgacgacttcttc
cgcatcaggttgattgcaaccatcctggagacatgcggcatgtactttgccaaaggtgca
gcaggcaagaagttggactatttcttatctttcttccagtactacatttataccaaacag
tctttgcccatggacatcgagttcattgttcaagacacgtttgcactcacgcgaccccaa
tggaagctggcatccaacctggaagaagcctcaaaggcatttcaactggccatagcccag
gatcagaaggtttcgggagccgacaagacccttgaggtagatgacgcatcgattggttct
tcttcggacgatgaagatggagatgagcatcttcccgaagcggaggccgacgaggaggaa
tcgggctctgatgatgaaggcgccgaggaccacgacgtggacatgtcacacgctgactct
gacagcgaagatgaagccattgtcgtcacccgccaacaggagcggatcgacccggaggct
gaagcggaattcgaacgtgagtacgccaagatgatggccgagagtctggagtcgcgcaaa
ttcgagcgcaagcctctctttgatgtgccgcttcccgtgcggggcaagtcaaaggaaacg
gcaacaggatcagagcctgtagagactggagcccccactgccagcactacgatggccttc
tctctcctgacgaagaagggcaaccgccaacagactcgaaccgtggagcttccttcggac
tcaaccttcgctgtcgctatgaagacacagcaacaggctgaaagggaggaacaacagcgc
atcaagaatcttgtcttgaactacgatcttcgcgagaatgaggatcccgatggtaatgac
cgccttacgttgctgcaatcaaacccaaatgttcacaacgcccaagcaggccacgaaaag
ccgacatcctaccaccacaaccgaccggaccgcggcaaagaccgtgggggacagcgggtc
cgcaaacttcagctaagtgacgttgattggtacgaatcatcaatcaagcgtggatcgggc
ttcgcgcgggcggctgcacttgatttcaacccggacgtggagtctggcaacgatgcaggg
cagtcggcaactcccacacatcagcatggcattgcatacaagcgttgcatgccggtcatg
ggttctgcgtccaggctggaagttcggaaggaacagcctcgccgagttcgcaagtaccag
tag
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integrated database retrieval system
