Colletotrichum higginsianum: CH63R_04735
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Entry
CH63R_04735 CDS
T08176
Name
(RefSeq) NOT2/NOT3/NOT5 family protein
KO
K12605
CCR4-NOT transcription complex subunit 2
Organism
chig
Colletotrichum higginsianum
Pathway
chig03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
chig00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CH63R_04735
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
chig03019
]
CH63R_04735
Messenger RNA biogenesis [BR:
chig03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
CH63R_04735
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
CH63R_04735
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
NOT2_3_5_C
CUE
Motif
Other DBs
NCBI-GeneID:
28863817
NCBI-ProteinID:
XP_018160956
UniProt:
A0A1B7YK37
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Position
3:complement(4023220..4026800)
Genome browser
AA seq
931 aa
AA seq
DB search
MSGITGSNGSGWAFGGGVPMGGAGLQNQGRQLGGNVSFAQSLSGSQPATPLDLSWTITSP
PLPLPCVYLRDDLPLLLLLPLSTTATLVTSRPSYPILISYLTPHTSYRVALFFLPLQSRH
LLLPPTTMRKKHRLVRKRATAKEKMGSPASPAELPKKGYAEVLKNEFPSLSNNAHMNTSG
QSNMWSSTASRNLGGGGGPVPRNQQSTPLSAQSTQDELFPPTSARQGAFRFGGQSSGGPA
PQAQSNPVDDFPPLNRNANGEIGGERGANLMPSLGFGNQASPSPAAIPPRSAGAGNGLLN
ALSANSRPDGRSPSIVSVQDLPRTQDGSTEKSGLLREETTGDSSAQAAESRNPLGAIGND
SVTGKAKDENDAQSPEVQDPLAGMAPIDKFGMKGLRVLMNNYPSYGALMQGMDPNEFGLN
VNSSDLISTQIYSLFDDTPPRPAIPSVRLPECYKVTNVQPIDTKIPSFNEETLFWIFYSC
TQDIKQHLAAIELHNRNWRWHKKLQVWLTKDELMMPTNIAPHLERGYYIVWDTTNWRKER
RELTLHYGDLAANLLSRWVDEAWNGLIPEHWAFHPTGVGFMLIRQRFTGFRIEAGLGGWQ
KLPNTAFTAVSCSAPFGNMCDSTCQRNAVVMLGSCGYSGRGSADELINSIRAADGLHVSV
PTTSLLPRVAATRSSTSPNHDHNFSKACTNPIAATERIPTYSPLTNARNLNKRVPIRPDP
TQPSTTEIHAHAHVASMANEQISLPYLVVILLVTAFVIRFLFFSPAPPPAPRQSAQSVLR
IREAAVERIQQMFPQVDRRTILWDLQRNGGNIQGTSERILAGRMETPPITFQPPSPPGAN
NASASSSAPAKAPEKPTQPDLITRYKLQGKIAAQQRQQAEADAAAEREKASRGWSSNRDE
RQSLLQKRRDEMILAARRKMEAKIAAEKASS
NT seq
2796 nt
NT seq
+upstream
nt +downstream
nt
atgtctggaatcacaggcagtaatggatctggctgggcctttggaggaggagtgcccatg
ggaggtgctggtctgcaaaatcaaggtcgtcaacttggaggaaacgtgagctttgcacag
agcttaagcgggtcgcaaccggcaacaccgctggacctttcatggacaatcacttcacct
cccctgcccctaccctgtgtttacctccgcgatgacctcccccttctccttctacttccc
ctttccacaacggctacacttgtcacaagccgaccctcataccccatactcatctcatac
ctcacacctcacacctcataccgagtcgccctgttcttcttgcccttgcaaagtcgtcat
ctcttgttacctcccacaacaatgagaaaaaagcatcggctggttagaaagagagccaca
gcaaaggagaagatgggttcacctgcttcccctgctgaattgcctaaaaagggctacgct
gaggttctcaagaacgaatttccgtctctctccaacaacgcccatatgaacacgagcggt
caatcgaacatgtggtcatcaacagcatcgcggaacctgggcggcggtggcggccctgta
ccgcgcaaccagcagtcgacaccactttcggcacagagcactcaggatgagttgtttccc
cctacgtcggctcgccaaggcgccttccgcttcggtggccagagcagtggaggcccagcc
cctcaggcgcaatccaacccggtagatgacttcccgcctctgaacaggaatgcgaacggt
gagattggtggcgagcgtggcgccaacctgatgccttctctgggctttggcaaccaagcg
agcccctcccccgcagcgatacctccccgaagtgcaggcgcaggtaatggtctgcttaac
gcgctatccgcgaatagtagaccagatggccgctccccgtcaattgtcagcgtacaggac
ctaccaagaacacaagacggatctaccgagaagagcggtcttctccgcgaagaaacaacc
ggtgacagctcagctcaagccgccgagagccgaaaccccctaggagctatcggtaatgac
tcggtcaccggcaaggccaaggatgagaacgatgcccagtcacccgaggtccaggatccg
ctggcaggaatggcgcccatcgacaagttcggcatgaagggcctgcgtgttctcatgaac
aactaccccagctacggagcgctcatgcaggggatggatcccaacgagtttggtctgaac
gtcaactcgtcagatctcatctcgacgcagatttactccctcttcgacgacacgccgcct
cgtcctgcgatccccagcgttcgtctgccagagtgctacaaagtgaccaacgtccagccc
atcgacacaaagatcccgtcgttcaacgaggagaccctcttttggatcttttacagctgc
acgcaggacatcaagcagcacttggctgccatcgagctacacaacagaaactggcggtgg
cacaagaagttgcaagtctggctgacaaaggatgagcttatgatgcccaccaacattgcc
cctcacctcgagcgcggctactacatcgtctgggacaccaccaactggcggaaggagcgg
agagagctcacgctccactacggtgatctcgcggcgaatctgctttctcggtgggttgac
gaggcttggaatggtctaatacctgagcactgggcatttcacccgacaggcgttgggttc
atgttgatacggcaacgttttacaggcttccggattgaagctgggctaggcggatggcaa
aagctgcctaacactgctttcaccgctgtctcatgctctgctccctttggcaacatgtgt
gattctacctgccaacgaaatgctgtggtgatgcttggaagttgtggttacagcggccgg
ggaagcgctgatgaactcatcaactccattcgagctgctgacggactccacgtatctgtt
ccgaccacatcccttctcccccgcgtagcagccacacgctcctccacttccccaaaccac
gatcacaatttctccaaggcgtgtaccaacccaattgccgcgaccgagagaatccctacc
tactcgcccctaacgaacgcacgcaacctcaacaagagagtgccgatcagaccggatccg
acgcaaccctcaaccactgaaatacacgcacacgcacacgtcgcaagcatggccaacgag
cagatctcactcccatacctggtggtgatcttgctggtgacggcgttcgttattcggttc
ctcttcttctcccccgccccgccgccggcgccgcggcagagtgctcagtcggtgctgcgc
atacgtgaggcggcggttgagaggatacaacagatgttcccgcaggtggaccggcggacc
attctctgggacctgcagaggaacgggggcaatattcaaggaacgtcggagaggatcctt
gcaggcaggatggagacgcctcccatcacgtttcagcccccttccccgccgggagccaac
aacgcgtcagcgagctcctcggcaccggccaaggcacctgaaaagccgacgcagccagac
ctgattacgaggtacaagctgcagggcaagatcgcagcgcagcagcggcagcaggccgag
gcagacgccgcggcggagagagagaaggctagcaggggatggagctcgaaccgggacgaa
aggcagtcgcttctgcagaagaggagggacgagatgattcttgcggctaggcggaagatg
gaggccaagattgctgcggagaaggcctcgagctga
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