KEGG   Colletotrichum higginsianum: CH63R_04754
Entry
CH63R_04754       CDS       T08176                                 
Name
(RefSeq) RNA polymerase Rpb5 domain-containing protein
  KO
K03013  DNA-directed RNA polymerases I, II, and III subunit RPABC1
Organism
chig  Colletotrichum higginsianum
Pathway
chig03020  RNA polymerase
chig03420  Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:chig00001]
 09120 Genetic Information Processing
  09121 Transcription
   03020 RNA polymerase
    CH63R_04754
  09124 Replication and repair
   03420 Nucleotide excision repair
    CH63R_04754
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:chig03021]
    CH63R_04754
   03400 DNA repair and recombination proteins [BR:chig03400]
    CH63R_04754
Transcription machinery [BR:chig03021]
 Eukaryotic type
  RNA polymerase II system
   RNA polymerase II
    Pol I, II, III common subunits
     CH63R_04754
  RNA polymerase III system
   RNA polymerase III
     CH63R_04754
  RNA polymerase I system
   RNA polymerase I
     CH63R_04754
DNA repair and recombination proteins [BR:chig03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    TCR (transcription coupled repair) factors
     DNA-directed RNA polymerase II complex
      CH63R_04754
SSDB
Motif
Pfam: RNA_pol_Rpb5_C RNA_pol_Rpb5_N NMB0315_dom_I
Other DBs
NCBI-GeneID: 28863836
NCBI-ProteinID: XP_018160975
UniProt: A0A1B7YKR3
LinkDB
Position
3:complement(4108406..4109292)
AA seq 230 aa
MSDQKDVNKEVTRLWRAWRTAHEMAADRGYELAEDELKISLDRFKMEYTAADGSVNRGKL
QFSANPSADMIRKYTPPPTSQNPNPTPDCGTLWVEFLADTTFGIKEIKKFIHHLISNKYS
SGIMVTHVPLSPAARKMLITIESFAKVECFLEEDLLVNITQHELVPKHILLSREEKVALL
KRYRLKETQLPRILQKDPVAKYLGLKRGQVVKIIRTSETAGRYASYRLCV
NT seq 693 nt   +upstreamnt  +downstreamnt
atgtcggaccaaaaggatgtcaacaaggaggttaccaggctgtggcgagcctggcggacg
gcccacgagatggctgcggatcgtggttatgaacttgctgaggatgaactcaaaatctcg
ctcgaccgcttcaagatggaatacaccgccgccgatggtagcgtaaaccgtgggaagctc
cagttctccgcgaacccctccgccgacatgattcgcaaatataccccccctccgacatcc
caaaacccgaacccgacacccgactgcggcaccctctgggtcgaatttctcgccgacacg
acttttggcatcaaggagatcaagaagttcatccaccacctcatcagcaacaagtactcg
tccggcatcatggtcacccacgtgcccctctcccccgccgcccgcaagatgctcatcacc
atcgagtccttcgccaaggtcgagtgcttcctcgaggaggaccttctcgtcaacatcacc
cagcacgagctcgtgccgaagcatatcctgctcagccgcgaggagaaggtcgccctgctc
aagcgctaccgtctcaaggagacccagttgccgcgtatcctgcaaaaagaccccgtcgcc
aagtacctcggtcttaagcgcgggcaggttgtcaagattatccgaacctctgagacggct
ggccgctacgccagttacagattgtgcgtataa

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