Colletotrichum higginsianum: CH63R_05361
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Entry
CH63R_05361 CDS
T08176
Name
(RefSeq) 3' exoribonuclease
KO
K11600
exosome complex component RRP41
Organism
chig
Colletotrichum higginsianum
Pathway
chig03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
chig00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CH63R_05361
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
chig03019
]
CH63R_05361
Messenger RNA biogenesis [BR:
chig03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
CH63R_05361
Prokaryotic type
Archeal mRNA degradation factors
Exosome components
Cofactors
CH63R_05361
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SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_PH
DUF4438_C
Motif
Other DBs
NCBI-GeneID:
28864443
NCBI-ProteinID:
XP_018158186
UniProt:
H1VBK0
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Position
4:complement(46423..47295)
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AA seq
266 aa
AA seq
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MPLDTSTYSMALLRVDGRRWNELRRLHAQIRTQDAADGSSYLEMGHTKVMCVVTGPTEPQ
RRGGAGGQSKEAAVTVNLVVAGFSSVDRKKRGRNDKRTQELEATIAKAVSANLHTHLFPH
SSISISLHVLSQDGSLLAALLNASTLALIDAGIPMTDYIAACTAGSTSTYAAADDGADPL
LDLNTQEEQELPYMTVGTLGLTDRVAVLVCESRVQVSRLEGMLAVGVDGCKQVRQFMDRV
VKEKGRQMVQEGVVERGTGLDLEMES
NT seq
801 nt
NT seq
+upstream
nt +downstream
nt
atgcctctcgacacatcgacctactctatggcgctgctgcgcgtcgatggccgccgatgg
aacgagctccgacggctgcacgcccagatccggacacaagacgccgccgatggctctagc
tacctcgagatgggacacaccaaagtcatgtgtgtcgtgaccggtccgaccgagccccag
cgtcgcggaggtgcgggcggccagtccaaggaggctgccgtcaccgtcaacctcgtcgtc
gccggctttagctctgtcgaccgcaagaagcggggccgcaacgacaagcgaacacaggaa
ctcgaggccaccattgccaaagccgtctcggcgaaccttcacacccacctcttcccccac
agcagcatttccatctctctacacgtactgtcgcaagacggttcactgctggccgccctc
ctaaacgcttcgacacttgccctcatcgatgcgggtattccaatgaccgactacatcgct
gcgtgcacggcgggttcgacttcgacatatgcagctgccgatgacggtgcagatcctttg
ctggatctcaacacccaagaggagcaggaattgccgtacatgacggtcggaactctgggt
ttgacggaccgcgttgctgtcctggtgtgcgagagtcgcgtccaggtcagccgtctggag
ggcatgcttgcggttggtgtggatggatgtaaacaggtacggcagtttatggaccgcgtt
gtcaaggagaaaggtcggcagatggtgcaagagggtgtggtggaaagaggtactggcttg
gatctggagatggaatcatga
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