Colletotrichum higginsianum: CH63R_05740
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Entry
CH63R_05740 CDS
T08176
Name
(RefSeq) Rhamnogalacturonan lyase
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
chig
Colletotrichum higginsianum
Brite
KEGG Orthology (KO) [BR:
chig00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
CH63R_05740
Enzymes [BR:
chig01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
CH63R_05740
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GFIT
Motif
Pfam:
RhgB_N
CBM-like
fn3_3
CarboxypepD_reg
Motif
Other DBs
NCBI-GeneID:
28864822
NCBI-ProteinID:
XP_018158565
UniProt:
H1VFS2
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Position
4:1438686..1440888
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AA seq
536 aa
AA seq
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MMFLSLLWSLLFLPSIVLAAFGWTDNGSEYVIDSGADLVIKVTKCCGDISSLKFKGVEYN
GWGGKNSHVESGLGASTVSIASYSNVIKVSVVHGTLRHWIFVRYGNNNVYLFTNKADNSI
SAMRYIVRIKGGLFSHAATESDFYDGGSSIIEAQDINVNSAGLTKSKHYQGSNYGRSTGS
THVTLLRANTQHKASGGPFFRSLVRRADPTGEDLYDIYYYNMGHTDPMRTGLQGPSVLAF
TSGEDPNSNLFARKADWSWFDDKGLNGWVPASGRGYASGVGLANMKSGKTYVVGLSNSVA
QYWGTAGAGGAWSIAKVIPGTYTLTVYKDELEVATSSVTIKAGAGTAVNTITCVDPQDDA
TIWRIGEWDGTPKGFLNFEDTPLKLTYMHPSDSRISTWNAGNFIVGTHGANRFPGYMWKE
VNSGYIIYFKLTADQLKSGHTVRIGLTEAYIGGRPAINVNSWASPLPAATTQASTRSLTV
GTYRGNNVKLTYAVPQSAWVQSTSEWQVLTINIISGSSGTKFLSPGVSFDALELLP
NT seq
1611 nt
NT seq
+upstream
nt +downstream
nt
atgatgttcctttcgctcctttggtcgcttctcttcctgccttcgatcgtcttggccgcc
ttcggctggactgacaacggctccgagtatgtcatcgacagcggcgccgacttggttatc
aaggtcaccaagtgttgcggtgacatctcctcgctcaaattcaagggcgtcgagtacaac
ggctggggcggcaagaacagccacgtcgagtccgggctgggagccagcaccgtaagcatc
gcgagctacagcaacgttatcaaggtttcggtcgtccacggcacactcaggcactggata
ttcgtccgttatggaaacaacaacgtctacctcttcacaaataaggccgacaactccatc
tccgccatgcgttacatagtccgcatcaagggcggattgttctcgcacgccgcaaccgaa
agtgatttctacgacggcggcagcagcatcatcgaggcccaagacatcaacgtcaacagc
gccgggctgaccaagagcaagcactaccagggctccaactacggccgttctaccggctcg
acgcatgtaacccttctccgtgctaacacacaacacaaggcctcgggcggcccctttttc
agatccctggtgcgtcgcgccgaccccaccggcgaggacttgtatgacatctactattac
aacatgggtcacaccgaccccatgcgcaccggtctccagggcccctcggtcctggccttc
acttccggcgaggatcccaacagcaatctcttcgctcgcaaggcggactggtcctggttt
gatgacaagggccttaatggttgggtccctgcttctggccgcggctacgcttctggcgtt
ggtctcgccaacatgaagtccggcaagacctacgtcgtcggtctgtcaaactccgttgcg
cagtattggggaaccgcgggcgccggcggcgcctggtccatcgccaaggtcatacccggc
acctacaccctgactgtctacaaggacgagcttgaggtcgcaacctcgtccgtcaccatc
aaggccggcgccggcactgccgtcaacaccattacttgtgtcgacccacaggatgatgct
accatttggcgcatcggcgagtgggatggaacccccaagggcttcttgaacttcgaggat
acccccctgaagcttacttacatgcacccctcggacagccgcatctccacctggaacgcc
ggaaacttcattgtcggcacacacggcgcgaatcgcttccccggctacatgtggaaggag
gtcaacagtggctacatcatctacttcaagctcacggccgaccagcttaagtcgggccac
acggtgcgcatcggcctcaccgaggcctacatcggcggccgccccgccatcaacgtcaac
tcatgggcctcgcccctgcccgccgccaccacgcaggccagcacccgctcgttgaccgtc
ggcacctaccggggtaacaatgtcaagctgacctacgccgtgccccagtccgcctgggtc
cagagcacgagcgagtggcaggtcctcaccatcaacatcatcagcggcagctccggcacc
aagttcctcagccccggtgtcagtttcgacgccctcgagcttctgccttga
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