Colletotrichum higginsianum: CH63R_06055
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Entry
CH63R_06055 CDS
T08176
Name
(RefSeq) Zinc finger ccch type domain containing protein
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
chig
Colletotrichum higginsianum
Pathway
chig03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
chig00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
CH63R_06055
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
chig03021
]
CH63R_06055
03019 Messenger RNA biogenesis [BR:
chig03019
]
CH63R_06055
Transcription machinery [BR:
chig03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
CH63R_06055
Messenger RNA biogenesis [BR:
chig03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
CH63R_06055
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-CCCH
zf_CCCH_4
Torus
zf-CCCH_2
zf-CCCH_4
zf-CCCH_RBM22
zf-CCCH_12
zf-CCCH_DUS3L
zf-CCCH_9
zf-CCCH_3
Motif
Other DBs
NCBI-GeneID:
28865137
NCBI-ProteinID:
XP_018158880
UniProt:
H1VHE8
LinkDB
All DBs
Position
4:complement(<2458297..>2459052)
Genome browser
AA seq
251 aa
AA seq
DB search
MAAVAPRPETTHILNHAPTATSFSFTPFLRQTYRHELSSDRPQCKSFLAGHCPLGASCPD
RHASSTSSNPSGGPSLVCKHWLRGLCKKGESCEFLHEYNLRKMPECNFFMRNGYCSNGEE
CLYLHIDPQSKLPPCPHYDKGFCPLGPRCSKKHVRRKLCAYYLVGFCPEGPGCKYGAHPR
WRTDLEKPSAKVEGEDEPKRDGEREDGESFQQQRDRQRDMHDDRGHGDRRHGGRGGKWRD
RGNRRFRGRGH
NT seq
756 nt
NT seq
+upstream
nt +downstream
nt
atggcagctgttgcgccccggccggaaacaacccacatcctcaatcacgccccgacggcg
acgtcgttctccttcacaccgttcctccgccagacctaccgccacgagctctcgtcggac
cgcccgcaatgcaagtcgttcctcgcaggccactgccccctcggcgcctcctgccccgat
cgccacgcgtcgtcgacgtcgtcaaacccgtcgggcgggccctcgctcgtctgtaagcac
tggctccgcggcctttgcaagaagggtgagtcctgcgagttcctgcacgagtacaacctg
cgcaagatgcccgagtgcaacttcttcatgcgcaacggctactgctccaacggcgaggag
tgcctgtaccttcacatcgacccccagtccaagctgccgccctgtccgcactacgacaag
ggcttctgcccgttgggcccgcgctgcagcaagaagcacgtccggaggaagctgtgcgcg
tactacctggtcggattctgccccgaggggcccggctgcaagtacggcgcgcacccgcgg
tggaggacagacctggagaagccgagcgccaaggtcgagggcgaggacgagcccaagagg
gacggggagagggaagacggcgaatcgttccagcagcagcgcgatagacagagggacatg
cacgacgaccgcggacatggggaccggaggcacggcggccgtggaggcaagtggcgcgat
cggggtaacaggaggttccgcggccgtggtcactga
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integrated database retrieval system
