Colletotrichum higginsianum: CH63R_07318
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Entry
CH63R_07318 CDS
T08176
Name
(RefSeq) Exosome complex exonuclease RRP43
KO
K12586
exosome complex component RRP43
Organism
chig
Colletotrichum higginsianum
Pathway
chig03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
chig00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CH63R_07318
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
chig03019
]
CH63R_07318
Messenger RNA biogenesis [BR:
chig03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
CH63R_07318
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_PH
RNase_PH_C
Motif
Other DBs
NCBI-GeneID:
28866400
NCBI-ProteinID:
XP_018157071
UniProt:
H1VPN2
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All DBs
Position
5:complement(1267974..1269002)
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AA seq
342 aa
AA seq
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MATSKGLPRDTFAKLSPHPFLLANLQPPAPANAARSNGRAPDEARIPNVNTSSLTHANGS
AVVRTGDTTVICGVRAETILAADIPNFRTAANLDETKPGSELKDYDLLVPNIELATGCAP
QFLPGVPPTTLAQTLSTRVYSLLHSSKLVDPEDLRIWYTRPAESAEAEDDDDDDKMDGDA
EKSGEGEKAVMAYWVLYIDIFFISFDGNPFDVAWTAILAALRDTTIPIARWDPDREMVIC
SRDEPKPLTLHGFPVACTAGVFAEKETTDRPSAGKFWTLVDLDTLEESLCDEQITAVVDR
SGGDTKVLSISKHGGTVLQPQLIREFVGVAERRWEQVWKAMA
NT seq
1029 nt
NT seq
+upstream
nt +downstream
nt
atggccacctcaaagggtctcccgcgcgacacgttcgcaaagctctcgcctcaccctttc
cttctcgcaaacctccagccgcccgctcccgccaacgccgcgagaagcaacggccgcgcc
cccgacgaagcccgcatccccaacgtcaacacctctagcctgacccacgccaatggtagc
gccgtcgtccgcacgggcgacacgaccgtcatctgcggcgtgcgcgccgagaccattctc
gccgccgacatccccaacttccgcactgccgcgaacctcgacgagaccaagcccggctcg
gagctgaaagactacgacctgctcgtccccaacatcgagctcgccaccggctgcgcgcct
cagtttctgcccggcgtcccccccacgacgctcgcacaaactcttagcacgagagtgtac
tcgttgctgcactcctccaagctcgtcgaccccgaggatctgagaatatggtacactcgc
cccgccgagagtgctgaggcggaggatgacgacgatgacgacaagatggacggcgacgcc
gagaagagcggcgagggcgagaaggccgtgatggcatactgggtcctctacatcgacatc
ttcttcatctcctttgacggcaaccccttcgacgtcgcctggaccgccatcctcgccgct
ctgcgtgacacaaccattcccattgcccgctgggaccccgatcgcgagatggtcatctgc
tcgcgcgacgagcccaagcccttgacgctgcacggcttccccgtcgcctgcacagccggc
gtcttcgcagaaaaggagacgacggaccgtccctcggccggcaagttctggacgcttgtc
gacctcgacacgctggaggagagtctctgcgacgagcagatcacagcggtggtagaccgc
agcggaggagacaccaaggtgctgtcgatatcgaagcacgggggcacagtgctgcagccg
cagctcatacgggagttcgtgggcgttgcggagcggagatgggagcaggtttggaaggcc
atggcatga
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