KEGG   Colletotrichum higginsianum: CH63R_07376
Entry
CH63R_07376       CDS       T08176                                 
Name
(RefSeq) ATP-dependent RNA helicase SUB2
  KO
K12812  ATP-dependent RNA helicase UAP56/SUB2 [EC:5.6.2.7]
Organism
chig  Colletotrichum higginsianum
Pathway
chig03013  Nucleocytoplasmic transport
chig03015  mRNA surveillance pathway
chig03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:chig00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    CH63R_07376
  09122 Translation
   03013 Nucleocytoplasmic transport
    CH63R_07376
   03015 mRNA surveillance pathway
    CH63R_07376
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:chig03019]
    CH63R_07376
   03041 Spliceosome [BR:chig03041]
    CH63R_07376
Enzymes [BR:chig01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     CH63R_07376
Messenger RNA biogenesis [BR:chig03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     CH63R_07376
Spliceosome [BR:chig03041]
 Complex C
  Other components
   EJC/TREX
    CH63R_07376
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    CH63R_07376
SSDB
Motif
Pfam: DEAD Helicase_C ResIII Cas3-like_C_2 DUF4844 CMS1
Other DBs
NCBI-GeneID: 28866458
NCBI-ProteinID: XP_018157129
UniProt: H1UX31
LinkDB
Position
5:1437241..1439205
AA seq 433 aa
MSAEEDLIDYSDEELQTNETAAASNGKKADAAAGNNVDKKGSYVGIHSTGFRDFLLKPEL
LRAIGDCGFEHPSEVQQTCIPQALLGGDIICQAKSGLGKTAVFVLTTLQQVEPVQGEVSV
LVMCHTRELAFQIRNEYNRFSKYMPDIKTGVFYGGTPIQKDVETIKNKETCPHIIVGTPG
RLNALVRDKVLRLGSVRIFVLDECDKMLDQIDMRRDVQEIFRATPTQKQVMMFSATLSDE
IKPICRKFMQNPTEHYVDEDTKLTLHGLQQYYIKLEEREKNRKLNELLDDLQFNQVIIFV
KSTLRATELDKLLRECNFPSIAVHSGVSQEERIRRYKEFKEFNKRICVATDVFGRGIDIE
RINLAINYDLPADADSYLHRVGRAGRFGTKGLAISFVSTDQDQEVLKAIEKRFEVALPEF
PKEGIDASTYMAS
NT seq 1302 nt   +upstreamnt  +downstreamnt
atgtctgctgaggaggatctcatcgactactccgacgaggagcttcagaccaacgagacg
gccgccgcctcgaacggaaagaaggctgacgccgccgctggcaacaatgtcgacaagaag
ggcagctatgtcggcatccactcgaccggtttccgcgacttcctcttgaagcccgagctt
ctccgcgctattggcgattgcggtttcgagcatccttcggaggtccaacaaacctgcatt
ccccaggctctcctcggtggagatattatctgccaggccaagtctggtctcggaaagacg
gccgtctttgtcttgacgaccctccaacaagtcgagcctgtccagggcgaggtctctgtg
ttggttatgtgccacactcgtgagctcgctttccagattcgcaacgagtacaaccgcttc
agcaagtacatgcccgacatcaagaccggcgtgttctacggtggcactcccattcagaag
gacgttgagacgatcaagaacaaggagacctgccctcacatcatcgtgggcacccctggc
cgacttaacgcgttggttcgcgacaaggttctccgcctcggcagcgtccgcatcttcgtt
cttgacgagtgcgacaagatgctcgaccagatcgacatgcgccgtgacgtccaggagatc
ttccgcgccacccccacccagaagcaggtcatgatgttctcggccactctgtctgacgag
atcaagcctatctgccgaaagttcatgcagaaccctactgagcactacgtcgacgaggac
actaagctcaccctgcatggtctgcagcaatactacatcaagctcgaggagcgcgagaag
aaccgcaagctcaacgagcttctggacgacctccagttcaaccaagtcatcatctttgtc
aagagcacgctgcgcgcgaccgagctggacaagttgctgagagagtgcaacttcccctcc
atcgcagtccactccggcgtcagccaggaggagcgtatccgccgttacaaggagttcaag
gagttcaacaagcgcatctgcgttgccaccgacgtctttggcagaggtatcgacattgag
cgcatcaacttggccatcaactacgacctgcccgccgatgccgactcttacctgcacaga
gtcggtcgtgctggccgtttcggtaccaagggtcttgccatctcctttgtgagcaccgac
caggaccaggaggttctcaaggccatcgagaagcgctttgaggttgctcttcctgagttc
cccaaggagggtatcgacgccagcacctacatggcctcttaa

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