Colletotrichum higginsianum: CH63R_07677 Help Entry CH63R_07677       CDS       T08176                                  Name (RefSeq) DSHCT domain-containing protein   KO K12599   antiviral helicase SKI2 [EC:5.6.2.6] Organism chig  Colletotrichum higginsianum Pathway chig03018   RNA degradation Brite KEGG Orthology (KO) [BR:chig00001]  09120 Genetic Information Processing   09123 Folding, sorting and degradation    03018 RNA degradation     CH63R_07677  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03019 Messenger RNA biogenesis [BR:chig03019]     CH63R_07677 Enzymes [BR:chig01000]  5. Isomerases   5.6  Isomerases altering macromolecular conformation    5.6.2  Enzymes altering nucleic acid conformation     5.6.2.6  RNA 3'-5' helicase      CH63R_07677 Messenger RNA biogenesis [BR:chig03019]  Eukaryotic type   mRNA surveillance and transport factors    Transport factors     eIF4F and regulatory proteins      CH63R_07677   mRNA degradation factors    3'-5' decay     Ski complex      CH63R_07677 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  DSHCT Ski2_N DEAD MTR4_beta-barrel MTR4-like_stalk ResIII DEXQc_Suv3 Helicase_C Ski2_beta-barrel Motif Other DBs NCBI-GeneID:  28866759 NCBI-ProteinID:  XP_018157430 UniProt:  H1UY38 LinkDB All DBs Position 5:2611671..2615656 Genome browser AA seq 1282 aa AA seqDB search MASDLAAAIRGLHLDNRLSPDIDDILFQQRPRKRVKQDASYVKAHLEADFLTPSTQFSSE WLSRLQQRWDCPVDYTELFRISAPQTRTVTRFERHGLEGRVTGYKNVTVPANSATAKNST SFLRKPASRADFVRGAAGFFPFAPGGLDGIEATAALEDQVHRAGGGESVAASSSKLERVI KLGDEGGLLEVAPGLSRGIDVNKKKTDDDEARAVEQELDREPEQAPGAEEAEAEAQTNGE KETGAEAGSENEEDGEDIDAILPVEFPALEPHGALAASSARKAGREWAHMVDINRDITNF RELVPDMARDWPFELDTFQKEAIYHLESGDSVFVAAHTSAGKTVVAEYAIALASKHMTKA IYTSPIKALSNQKFRDFRQTFDEVGILTGDVQINPEASCLIMTTEILRSMLYRGADLIRD VEFVIFDEVHYVNDFERGVVWEEVIIMLPEHVTLILLSATVPNTYEFASWVGRTKQKDIY VISTPKRPIPLEHYLWAGKNIHKIVDSDKKFIEKGWKEANQAIQGKDKMKIPESSNAPRG GGGQRGAPRGGIQRGGQRGGQRGGGSQQRGRGGAPRASHNPGHMGRIGRQGGFTSAAQDK NLWVHLVQFLKKDNLLPSCIFVFSKKRCEENADALSNQDFCTANEKSAIHMTIEKSIARL KPEDRTLPQIIRLRELLSRGIAVHHGGLLPIVKEIVEILFAQTLVKVLFATETFAMGLNL PTRTVVFSGYRKHDGHSFRNLLPGEYTQMAGRAGRRGLDTVGSVIIVPPGGDEAPPVADL QKMILGEPSKLRSQFRLTYNMILNLLRVEALKIEEMIKRSFSEHATQQLLPEHEKAVKIS EADLAKIKRDSCGICDVSMDECHQASEDYKQLTGDVYKSLIGIPIGRKMFSQARLIVYSR DGIRTPGILLSDGASNKGPQGSPTLHVCEIRLMRETRDSTDLLPFIPAFRKYLTPLPQAK KHMRIKTLHVPLSDVECLTRYVTKGIVPEIFQSGEKYIKAKDRLYSICRSWDDLWDEMDL SKIKNLQFQEMMKKRKEAEVTASSSPALSCPQFLKHFAMCHDQWLIKEHISQLRHSLSDQ NLQLLPDYEQRIQVLKQLQFIDESARIQLKGKVACEIHSGDELVLTELILDNVLADYEPA EIAALLSAFVFQEKTDTQPNLTGNLERGKDTIIAISEKVNEVQTLHQVIQSADDSNDFIS RPRFGLMEVVYEWARGMSFKNITDLTDVLEGTIVRTITRLDETCREVKNAARIIGDPELY QKMQTAQEMIKRDITAVASLYM NT seq 3849 nt NT seq  +upstreamnt  +downstreamnt atggcgtccgacttggctgctgccattcgaggtcttcatctggataatcgtctcagccct gatatcgatgatatcttgttccagcaacgacctcgcaaacgcgtcaagcaggatgcatcc tacgtcaaggctcatttggaggctgatttcctgacgccctctactcaattctcgtccgag tggctcagtcgactgcaacagcgctgggactgccccgtagactacacggagcttttcagg atttctgctcctcaaactcgaactgtgacacggtttgagcgacatggccttgaaggcaga gtgaccggctacaagaacgtcaccgtgccggccaacagtgctaccgccaagaactccacc tcctttctgcgcaagcctgctagtagagctgacttcgtccgtggagctgccgggttcttc cctttcgcacctggcggccttgatggcatcgaagcgacagcggcactcgaggaccaggtc caccgggctggcggcggagagtctgtcgctgcctcgtccagcaagctcgaacgagtcatc aagctcggtgacgagggcggccttctcgaggttgcacctggcctcagccgcggcatagat gtgaacaaaaagaagaccgacgacgatgaggctagggccgtcgagcaggagctggaccgg gaacccgagcaggcgcccggtgctgaagaagcagaggcggaggcgcagaccaacggagag aaggagaccggggccgaagccggttctgaaaacgaagaggacggcgaggacattgatgct atcttgccggtcgagtttccggctctcgagccacacggagctttggcggcatccagtgcc aggaaggctggccgggaatgggcccacatggtggacatcaaccgagacatcacaaacttc agagagttggtacccgacatggcaagagactggcccttcgaactcgacacgttccaaaag gaggctatttaccatctcgaaagtggcgattctgtattcgttgctgcgcatacatcagcc ggcaaaactgtcgtcgccgagtatgccattgcccttgcctccaagcacatgaccaaggcc atctacacgtcacccatcaaggccttgagcaatcagaagttccgagacttccgccagaca ttcgacgaagttggtattctgacgggcgacgttcagatcaacccggaggctagttgcctg atcatgacaacagagattctgcgaagcatgctgtaccgaggagccgatctgatccgagac gtagagtttgtcatcttcgacgaggtacactacgtcaatgattttgagcgcggtgtcgtc tgggaagaggtcatcatcatgcttccagaacatgttacccttatcctgttgtctgcgact gtccccaacacttatgagtttgcctcatgggtcgggcggaccaaacagaaagacatttat gtcatctccacacccaagcggcctattcctctggagcattacttgtgggctgggaagaac attcacaagattgttgactcggacaagaaattcattgagaagggctggaaggaggccaat caagccattcagggcaaagacaaaatgaagattccggagtcgagcaatgcgcctcgtggt ggaggtggccaaagaggggcaccgaggggagggatacagcgtggtggacagcgcggaggc caacgtggcggtggttcccaacagagaggccgtggtggagcgcctcgtgccagtcataac cccggacacatgggtaggattggtcggcagggcggatttacctccgctgctcaagacaag aatctttgggttcaccttgtgcagtttctcaagaaggacaatctgcttccctcgtgcatc ttcgtcttctccaagaagcgatgcgaagagaatgctgatgcgctcagcaaccaagacttc tgcacagccaacgagaagagcgccattcacatgacgatcgagaagtctatcgccagactc aagccagaggaccggaccctgcctcagattatcagattgagggagctcttgtccagaggc atcgcggtccaccacggaggtctgctgcccatcgtcaaggaaattgtcgagattctgttc gcccagactcttgtaaaggtgctcttcgctacagagacatttgccatgggtcttaacctg ccgactcgaacagtcgttttctccggataccgcaagcatgacgggcactccttcagaaac ctgctcccaggcgagtatacacagatggccggccgagccggtcgtcgtggcctggatact gtgggctcggttatcattgtgccgcccggcggagacgaggctcctcctgttgccgacctt caaaaaatgatcttgggagagccgtcgaagctgaggtctcagttccgactcacctacaac atgattctcaacctgcttcgggtggaagccctcaagattgaagagatgattaagcgcagc ttttcagaacacgccacgcagcagctgctccctgaacatgaaaaggcagtcaaaatttcg gaggccgatttagccaagatcaaacgagactcttgtggcatatgcgatgtctccatggat gaatgccaccaagcgtcagaggactataaacaactcacaggcgacgtctacaagtctctc atcggcattccgatcggccgcaaaatgttcagccaggcgcgcttgatcgtgtacagcagg gacggcatccgtacgcctggtattttgctgtctgacggcgcgagcaacaagggtccccag ggtagtccaacactacatgtctgcgaaatcaggctgatgagagagactcgcgactcaacg gacctgttgccgttcattccggccttccgcaagtatcttacgccactgccgcaggcaaag aagcatatgcgcatcaagactctgcatgttcctctgagtgatgttgaatgtcttacaagg tacgttaccaagggtatcgtgccagagatctttcagagcggcgaaaagtatatcaaggca aaggacaggctctactcgatctgccggtcttgggatgacctctgggacgaaatggatctg tccaagatcaagaatcttcaattccaggagatgatgaagaagcgaaaagaggcagaggtc accgcatcgtcttcgccagctctctcatgccctcagttcttgaagcattttgccatgtgc cacgaccagtggctcatcaaggaacatatctcccaactgcgacactctctttcggaccag aatctccaactcttgccagactatgagcaacgcatccaggtgctcaagcaactgcaattt attgatgagagtgcaagaattcaactcaagggcaaggtggcctgtgagattcattcgggc gacgagctcgtattgacggaactcatcctggacaatgtgctcgcagactatgagccggcc gaaattgcggcccttctgtcggcctttgtgtttcaggaaaagacagatactcagccgaac ttgacgggcaaccttgagcgaggcaaggacactattattgccattagcgagaaggttaac gaagtccagacgctccatcaggtcattcagtctgccgacgattccaacgatttcatctcc cgacccagatttggcttgatggaagttgtatacgagtgggcaagaggcatgagcttcaag aacatcaccgatctgaccgatgtcctggagggcaccattgtgcgaaccataacgcgtctt gatgagacgtgccgcgaagtgaagaatgctgcccgcatcatcggagatccggagctatac cagaagatgcagacggcacaggagatgatcaaacgggacatcacggcagttgccagtctg tacatgtag

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