Colletotrichum higginsianum: CH63R_07696
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Entry
CH63R_07696 CDS
T08176
Name
(RefSeq) 3' exoribonuclease
KO
K12587
exosome complex component MTR3
Organism
chig
Colletotrichum higginsianum
Pathway
chig03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
chig00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CH63R_07696
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
chig03019
]
CH63R_07696
Messenger RNA biogenesis [BR:
chig03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Core exosome factors
CH63R_07696
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
RNase_PH
Motif
Other DBs
NCBI-GeneID:
28866778
NCBI-ProteinID:
XP_018157449
UniProt:
A0A1B7YA08
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Position
5:2716047..2716972
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AA seq
291 aa
AA seq
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MTDRRRINGPPGATLPPVYDISNQTSASRARPGNTIRGLFLKTGVTPTASGSAYMEIEPP
YGHVSSKSKVNGMKLICTVHGPRSLPRSAPFSPYLVLSTHVKYAPFATRQRRSYLRDSSE
RDISVHLDTALRGVIIADRWPKSGVDVIVTIIEGDQEREASHFQGNEEWDMMNVLSGCVT
VAAAALADAGIDCVDMVTGGVAALVASDKGDTNTPSIVLDPVSLEHESILAACCVAYLPN
RAEITNLWVKGQLPPSDASLHTKLIGRAIQASKGNYRAVLERLQNNQPPNS
NT seq
876 nt
NT seq
+upstream
nt +downstream
nt
atgactgatcggcggagaatcaacgggccgcccggcgcaacattgccaccggtctacgat
atcagcaaccaaacctcggcctctcgggcaaggccaggaaataccattcggggcttgttc
ctcaagactggcgtgaccccgacggcatcgggttcagcctacatggaaatcgaaccgcct
tacggtcatgtgagctcaaagtccaaggtcaacgggatgaagctcatctgcaccgttcat
gggcctcgttccctcccacgatctgcaccattctcaccctatttggtactctcaacccac
gtcaaatacgctcctttcgctacgcgtcaacgccgcagctatcttcgcgactcgagtgaa
agggacatcagcgtccaccttgacacggctcttcgtggagtcatcatcgctgaccgatgg
cccaagagtggcgttgatgttattgttaccatcatcgaaggtgatcaggagcgagaagcc
tctcattttcaaggcaacgaggaatgggatatgatgaacgttctcagtgggtgcgtcacc
gttgccgcagccgctcttgcggatgctggcattgattgtgtggacatggtcacaggcggt
gttgcagctcttgtcgcttcagataagggcgacacgaacacgccatccattgtgctggat
ccagtctccctggaacacgagagtattctggctgcctgttgtgttgcctacttgcccaat
cgcgctgagattaccaacctctgggtaaaaggccaacttccgccgtccgacgcgtcgttg
catacaaaactcataggccgtgccattcaagcttccaagggcaactaccgtgctgttctt
gaaagactacaaaacaaccaaccgcctaacagctag
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