Colletotrichum higginsianum: CH63R_08217
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Entry
CH63R_08217 CDS
T08176
Name
(RefSeq) Formamidopyrimidine-DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
chig
Colletotrichum higginsianum
Pathway
chig03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
chig00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
CH63R_08217
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
chig03400
]
CH63R_08217
Enzymes [BR:
chig01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
CH63R_08217
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
CH63R_08217
DNA repair and recombination proteins [BR:
chig03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
CH63R_08217
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
H2TH
Fapy_DNA_glyco
Fpg-like_C
NFACT_N
Motif
Other DBs
NCBI-GeneID:
28867298
NCBI-ProteinID:
XP_018157969
UniProt:
A0A1B7YBK9
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Position
5:complement(4509143..4510570)
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AA seq
475 aa
AA seq
DB search
MGICSDCTLSSSHAFVVARCVHFLRRHLLGKKIAKVSAPDDANVFGKVGTSGPAFEKAVK
GRKVVSVGSQGKYFWYVFRPRIPVHVGGSPAHESQDNLRQTASCGDALGHDRYEAPVAPP
ALLCLRADIAQGWIHIKGDKTAYTNYYKKMKDGEADVWPPKYWKFQLETDDDPPVAAAFT
DPRRFGRIRLVNCPGADIRNHSPLKENGPDPVVDADVFTEAYFCDKMRSRHVPVKALLLD
QSHISGIGNWVADEVLYQSRLHPEQYCDTFAEAESRRLYEAVRYVCQTAVDKLGDSDEFP
ADWLFNYRWGKGSKDAASALPNGEKLAFITVGGRTSCYAPGRQKKTGQVVASAKEEPVGD
EEGKPKAVPGKAKRRVKAQESEDEKPAKKARGAKGSATSKSKAKVKQEEEDQEEEEAPQP
PAVETVPGRKSRGSKAAEKPKAPSGAKKNTAKDKAKVETPVEDTGSRRRSLRLKK
NT seq
1428 nt
NT seq
+upstream
nt +downstream
nt
atgggcatctgttccgactgcactctcagctcatctcatgcctttgtagtcgcccggtgc
gtgcacttcctgcgccggcacctgctcgggaagaagatcgccaaggtctctgcccccgac
gatgccaatgtcttcggtaaggtcggcactagcggtccggccttcgagaaggcagtgaag
ggacggaaggtcgtgtctgtgggaagccaagggaagtacttttggtacgtcttccggcct
cgcattccagtacacgtagggggatcgccagctcacgaatctcaggataaccttcgacaa
accgcctcatgcggtgatgcacttgggcatgacaggtatgaagcacccgtcgcccctccg
gcactgctttgtctcagggctgacatcgcgcaagggtggatacacatcaagggcgacaag
actgcctacacgaactactacaaaaagatgaaggacggtgaggccgacgtctggccgcca
aagtactggaagttccagctcgagaccgacgacgacccccccgtcgcggccgccttcacc
gacccgcgtcgcttcggccgcatccgcctcgtcaactgccctggtgccgacatccggaac
cactcgccgctcaaagaaaacggcccggaccccgtcgtcgatgccgacgtcttcaccgag
gcctacttctgcgacaagatgcgctcgcgccacgtgcccgtcaaggcgctgctgctggat
cagtcacacatcagcggcatcggcaactgggtcgccgacgaggtgctctaccagtcgagg
ctgcacccggagcagtactgcgacaccttcgccgaggccgagtcgcggcggctatacgag
gccgtgcggtacgtgtgccagacggccgtcgacaagctcggcgactcggacgagttcccg
gccgactggctgttcaactaccgctggggcaaggggagtaaggacgccgcctcggcgctg
ccgaacggagagaagctcgccttcatcacagtcggcgggcggacgagctgctacgctccc
gggaggcagaagaagacggggcaggtcgtggcctcggccaaggaggagcctgtcggggac
gaggaggggaagcccaaggccgttcccgggaaggccaagaggcgggtgaaagcacaggag
agcgaggacgagaagcccgccaagaaagcgcggggcgccaaaggctctgcgacgtcaaag
tccaaggcaaaggttaagcaagaggaggaggatcaggaggaggaggaagctccccagcct
cctgcggtcgagaccgttccaggacggaaatcgcggggctccaaagccgcagagaaaccc
aaagccccatccggggcgaagaagaacactgcaaaggataaagcgaaggtggagactccg
gtagaggatacgggtagtagacggagatccctccgattgaagaaatag
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