Colletotrichum higginsianum: CH63R_08488
Help
Entry
CH63R_08488 CDS
T08176
Name
(RefSeq) Pectate lyase B
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
chig
Colletotrichum higginsianum
Pathway
chig00040
Pentose and glucuronate interconversions
chig01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
chig00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
CH63R_08488
Enzymes [BR:
chig01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
CH63R_08488
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
28867569
NCBI-ProteinID:
XP_018155485
UniProt:
H1W044
LinkDB
All DBs
Position
6:complement(261002..261994)
Genome browser
AA seq
330 aa
AA seq
DB search
MKFSITSTIAVLAALANATPTPTVVGGSAVDPRAVQKRATVNDACDIGYGAGTTGGAGGA
TTTVTNFAEFSAAVTSKEKGIVIVKGAITGSEKVRVASNKSIIGAAGSSITGVGLYVNKA
ENVILRNLKISKVKASAGDAIGIQASSKVWVDHCDLSSDRENGKDFYDGLLDVTHASMAV
TISNTYLHDHYKASLVGHSDSNAAEDTGKLYVTYANNYWKNLGSRMPSVRFGNVHIFNNY
EENIETSGVNTRMGAQVLVESSVFSGVKKAITSLDSKTKGSATVVDVDLGNSTNDAPKGT
FTKPDYTYTKLGAAKVKAAVTAEAGQTLKF
NT seq
993 nt
NT seq
+upstream
nt +downstream
nt
atgaagttcagcatcacctccaccatcgccgtcctggccgccctcgccaacgccaccccg
acccccaccgtcgtcggcggctccgccgttgacccccgtgccgtccagaagcgcgccacc
gtcaacgacgcctgcgacatcggatacggtgccggaaccaccggcggtgccggcggtgcc
accaccaccgtcaccaacttcgccgagttctccgccgccgtcacctccaaggagaagggc
atcgtcatcgtcaagggcgccatcaccggctccgagaaggtccgcgtcgcctccaacaag
tccatcatcggcgccgccggctcctccatcaccggtgtcggcctgtacgtcaacaaggcc
gagaacgtcatcctccgcaacctgaagatctccaaggtcaaggcctcggctggcgacgcc
atcggcatccaggcctcctccaaggtctgggtcgaccactgcgacctctcgtccgaccgt
gagaacggcaaggacttctacgacggtctcctcgacgtcacccacgcctccatggccgtc
accatctccaacacctacctgcacgaccactacaaggcctcgctcgtcggccactccgac
tccaacgctgccgaggacactggcaagctctacgtcacctacgccaacaactactggaag
aacctcggctcccgcatgccctccgtccgcttcggcaacgtccacatcttcaacaactac
gaggagaacatcgagacctccggcgtcaacacccgcatgggtgcccaggtcctcgtcgag
tcctccgtcttctccggcgtcaagaaggccatcacctcgctcgactccaagaccaagggc
tctgccaccgtcgttgacgtcgacctcggcaactccaccaacgacgctcccaagggcacc
ttcaccaagcccgactacacctacaccaagcttggcgctgccaaggtcaaggccgccgtc
accgccgaggctggccagaccctcaagttctaa
DBGET
integrated database retrieval system
