Colletotrichum higginsianum: CH63R_08967
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Entry
CH63R_08967 CDS
T08176
Name
(RefSeq) PRP1 splicing factor
KO
K12855
pre-mRNA-processing factor 6
Organism
chig
Colletotrichum higginsianum
Pathway
chig03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
chig00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CH63R_08967
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
chig03041
]
CH63R_08967
Spliceosome [BR:
chig03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
CH63R_08967
Complex C
U5 SnRNP specific factors
CH63R_08967
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PRP1_N
TPR_14
TPR_19
HAT_PRP39_N
TPR_16
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
TPR_2
HAT_Syf1_CNRKL1_C
Suf
TPR_8
TPR_CcmH_CycH
TPR_9
NatA_aux_su
TPR_15
ARM_TT21_2nd
ARM_TT21_C
ARM_TT21
TPR_21
ARM_TT21_5th
Motif
Other DBs
NCBI-GeneID:
28868048
NCBI-ProteinID:
XP_018155964
UniProt:
H1VXZ7
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All DBs
Position
6:complement(1849975..1852809)
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AA seq
925 aa
AA seq
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MSGRRDFLSQPAPENYVAGLGRGATGFTTRSDLGPAREGPTEDQIKEAVAKRAAQLGLGT
DGKKADDNENDDDDRFKDPDNEVGLFAGGVYDKDDEEADRIWKEVDEKMARRRQKQREAR
EKAEQEEYERKNPKIQQQFADLKRALSTVTDDEWANLPEVGDLTGKNRRSKQNLRQRFYA
VPDSVLAAARDSSELGTTVAEDGASSSADATDGTMTNFAKIGAARDKVLKSRLEQASQDG
TESVAGSASTIDPKGYITSLNKSVLNESQAQVGDINRVRELLTSVIKTNPNNAPGWIAAA
RLEELAGKTVAARNVIARGCTHCPKSEDVWLENIRLNEGKNAKIIAAEAIKKNDRSVRLW
VEAMRLENEPRAKKRVIRLALDHIPESEALWKEAVNLEEDPEDARLLLAKATELIPLSVD
LWLALARLESPENAQKVLNRARKAVPTSHEIWIAAARLQEQLGEGTKVNVMKRAVAVLVK
ESAMPKREEWIGEAEKCEEEGAVITCGNIIRETLGYGLDEDDDRKDTWMEDARSSINRGM
YETARAIYSYALRIFVNSRTLWMAAADLERNHGTKESLAQVLEKAVEACPKSEVLWMMLA
KEKWQAGEVDNARLVLARAFKSNPDNEDIWLAAVKLEAENGETERARKLLEEARDQAPTD
RVWMKSVVFERVLGNSDAALDLVQRALQYFPATAKLWMLKGQIYEDLDKVGQAREAYSTG
VKAVPKSVPLWLLYSRLEEKAGLVVKARSVLDRARLAVPKSPELWCESVRIERRAGNINQ
AKSLMAKALQEVPKSGILWSEQIWHLEPRTQRKPRSLEAIKKVDNDPILFVAVARIFWGE
RKLEKAQNWFEKALVLDSDNGDTWAWYYKFLLQHGTDEKRADVINKCVLNEPRHGEYWQA
IAKQPANARKGTEEILKMVAERLEK
NT seq
2778 nt
NT seq
+upstream
nt +downstream
nt
atgtctggaagacgcgactttttgagccagccggctcccgagaactacgttgccggtctt
ggtcgaggcgccaccggctttacgacgcgatccgatttgggccctgcgcgtgaaggacca
acagaagatcaaatcaaggaggctgtcgcaaagcgggcagcgcagcttggacttggaacc
gacggcaaaaaggcggacgacaacgaaaacgacgatgacgaccgattcaaagatcccgac
aacgaggttggcctgttcgctggtggcgtatacgacaaggacgacgaggaggccgatagg
atatggaaggaggtagacgagaagatggcaaggaggcgacaaaaacaacgagaagcgcgc
gaaaaggccgagcaggaggaatatgagcggaagaaccccaagatccagcagcagtttgca
gacctcaagagagcgctttcgacagtcacggacgacgaatgggcaaacctccccgaggtt
ggagatctgacaggaaagaatcgcaggagcaagcagaacttgcgccagagattctatgcc
gttcccgacagcgttcttgctgccgcaagagactcgtccgaactgggcaccaccgttgca
gaggatggcgcttcatcaagcgcagacgcaacagacggtacgatgacaaatttcgcaaag
atcggtgctgcgagagacaaagttctcaagtcaagacttgaacaagcgtcccaggacggt
actgagtcggtcgctggcagcgcgtcgacaatagatcccaagggctatatcaccagcttg
aacaagagtgtcctgaatgagtcgcaagctcaagttggggacatcaaccgtgtccgcgag
ctcttgacctctgtcatcaaaaccaatccgaacaatgcgccaggttggatcgcggccgcg
cggctggaggagctggcaggcaagacagttgctgcgcgcaatgtaattgcgcggggatgt
acccactgccccaagagcgaggacgtctggttagagaacatccggcttaacgagggcaag
aacgccaagatcattgctgcggaagccatcaagaaaaacgaccggtcagtgcgtctctgg
gtcgaggcgatgagactggagaacgaacccagagcgaaaaagagagtcatcagactcgcc
ctagaccacattcccgaatccgaggctctctggaaagaagcggtcaacctggaagaagat
ccggaagatgctcggctgctgctggccaaagcaacagagcttatacccctatccgttgat
ctgtggttggcattggcaagactggaaagtcccgaaaacgcccaaaaggtactcaacagg
gcccgcaaagcggttcccacctctcacgagatttggatcgctgccgctcgtctgcaggag
cagctgggcgagggcaccaaggtgaacgtcatgaaacgtgccgtcgcggttctcgtcaag
gaatctgccatgcctaagcgcgaggagtggattggcgaagccgagaagtgcgaggaggag
ggcgctgtcattacctgcggaaacatcatcagagagaccttgggctacggtctggacgag
gatgacgaccgcaaagacacctggatggaggatgcaagaagtagcatcaaccgcggcatg
tacgagactgcgcgggctatttactcctacgcgctacgtattttcgtcaacagcaggaca
ttatggatggccgccgccgacctggagagaaaccacggaacgaaggagtctcttgctcag
gtcttggagaaggctgtcgaagcatgccccaagagcgaggtattgtggatgatgctggcc
aaggagaagtggcaagctggcgaagtcgacaatgccaggctggtgcttgccagagccttc
aagtcaaatccggacaacgaagacatttggctcgccgccgtcaagctcgaagctgagaat
ggggaaaccgagcgcgcacgaaagctactggaggaagcgcgggaccaggcccccacagac
cgcgtgtggatgaagagcgtggtgttcgagagagtgctgggcaacagcgacgcagcgttg
gacctcgttcaacgggctctgcagtacttcccggccacggctaagttgtggatgctcaag
ggacaaatctacgaagaccttgataaggtcggtcaggcgcgggaggcgtacagcacaggc
gttaaggcggtacccaaatcggtccccctgtggctcctttactcccgcctggaagagaag
gccggactggttgtcaaggctcggagcgttcttgaccgagcccgattggccgttcccaag
tcgccagagctatggtgcgagtctgtccgcatcgagcgacgtgcgggaaacatcaatcag
gccaagtcgctcatggccaaggcacttcaagaagtaccgaagagtggtatcctttggagt
gagcagatctggcacctggagccacgcacgcagcggaagccacggtcactggaggccatc
aagaaggtggataacgacccgatcctttttgtggccgtggcccgtatcttctggggtgaa
cgcaagctcgagaaggctcagaattggttcgaaaaggcgctggtgctggacagcgacaac
ggcgacacctgggcttggtattacaagttcctgctccagcacggcacagacgagaaacga
gcggacgtcattaacaagtgcgtcttgaacgagcctcgacacggggaatactggcaggcg
atcgccaagcagcctgccaatgctcggaaaggcaccgaagaaattcttaagatggtggca
gaaaggttagagaaatga
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