Colletotrichum higginsianum: CH63R_08979
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Entry
CH63R_08979 CDS
T08176
Name
(RefSeq) Transcription elongation factor SPT6
KO
K11292
transcription elongation factor SPT6
Organism
chig
Colletotrichum higginsianum
Brite
KEGG Orthology (KO) [BR:
chig00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
chig03021
]
CH63R_08979
03036 Chromosome and associated proteins [BR:
chig03036
]
CH63R_08979
Transcription machinery [BR:
chig03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
CH63R_08979
Chromosome and associated proteins [BR:
chig03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
Other Histone chaperones and regulators
CH63R_08979
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SH2_2
HTH_44
HHH_7
YqgF
Spt6_S1
Tex_central_region
SPT6_acidic
HHH_9
SH2
HHH_3
DUF7800
Motif
Other DBs
NCBI-GeneID:
28868060
NCBI-ProteinID:
XP_018155976
UniProt:
A0A1B7Y678
LinkDB
All DBs
Position
6:1897299..1901691
Genome browser
AA seq
1408 aa
AA seq
DB search
MSNSMRDFVDGEAEIDDEDEESIDEDVVSSRRRNAAPEDSSEEEEDDEDEEEARKIREGF
IVDEDEEEEEGEDEDAHERKRKREHRDREEEEQLDEDDLELIGEQIERRAPTQPKFKRLK
RGHRDEDDRGPERRGLEDMFSDDDEEANESRPYNRSNYRSQADEFDDFIEEDYPEDEDER
ARQLEDAEVARPRDKGVGGVVDTAGLDKDALEDMEAIFGNGEDYDWALQMEDEEEDRERE
EQVIELKDVFEPSQLKEKLLTDEDNQIRFTDEPERFQLDRKPFKHLQISAEQFKEEARWI
AGLMWPKKLLQSELHGPFTKAIGKVLEFFVVDDVEVPYVFQHRKDYLIHAKKTKNPDHRD
DPDAPEWIVSADKLLTQDDLWRILELDIKFRSLIEKRNALEKTLENLKSTSSFKDAVLED
MIPQAATMEELQDLQDYLHFQYASELKDMSSINGNGSQMKRPGSKSNLFDRVRRSKAFGF
VRAYGITPDRFAQNTLREGNKVWADDDSQLPDDLADSLTDEEFQTGDTVMYAARQMYAEE
LFVNPRMRKHFRVNFYQMGEISCRRTEKGLKKIDESHPFYEVKYLINQTIADVARQPDLY
LKMMKAEEEGLIEVKLTLENDDGFKRQLRQEFISDNYSELADRWNEERQKVLDLVVPRLS
KIIAKGVKESLRTACQEEVLKTCREEYSKRLDQAPYKPKGMILGTVPRIITLSNGMADPA
RDPTCWASVEEDGRVIEQGKLGNLARDERAREEFVEIVNRRRPDAIGVSGWSADTQKLVR
DLESLISEKGLMGPEFDDPELGEYRTEPLEVIVVNDEVARLYKDSPRAVAEHPTLSSLTR
YCIALAHYMQNPLKEYAALGKDVTSLAFHPCQNLLPQEKLLKHLESAMVDMVNLCGVNIN
EAVGDSYTANLLPYVAGLGPRKATSVIKAINANGGAVSSRDELVGDPDSGKLPVVGPRVW
NNCASFLFIDYDATNPTSDPLDNTRVHPEDYELGRKMAADALELDEEDVKAETDHNGPGA
IVRKLFKEDEQEKVNELILEEYAEQLERNYSQRKRATLETIRAELQAPYEELRRNFAPLG
PHDIFTMFTGETKDTLAQGMIIPVNVRVVKDDFAIVKLDCGIEGRIESHDGPDGVRVRGL
LTNGQTVQAKVLEINYKDFLAKLSARDAEVKRPYKRPLYHGHGQWDERLEAADREELREK
DKSTGRTQRVIKHPLFKPFNGLEAEQWLGTQAAGEVIIRPSSKGNDHLAITWKVADGVFQ
HVDVLELQKETEFSVGKLLRVGGKFTYKDLDELIHEHIEAMSRKVDEMMQHKKFEKRSKT
DLEKWLTTYMEANPDRSDYAFCIDPKHPGYFWLCFKASRSSRVNSWPVRVIPGGFELLKQ
AYPDMRALCNGFKIRYQTEITKMQKGGR
NT seq
4227 nt
NT seq
+upstream
nt +downstream
nt
atgagcaactcaatgcgagatttcgtcgatggcgaggccgagatcgacgatgaggatgag
gagtccatagacgaagacgtggtttcttcgcgcagaaggaatgcggctccggaggattct
tctgaagaggaagaggacgacgaagacgaggaggaggcgcgtaaaattcgcgaaggattc
atcgtcgatgaggacgaagaagaggaagaaggcgaggacgaggatgcccacgagcgaaag
cgaaaacgagagcaccgcgacagagaagaggaagagcagctagatgaggatgatttggag
ctaatcggagaacaaatcgaacgccgtgcgcccacacagcctaagttcaagcgtctcaaa
cggggccatcgcgacgaagatgaccgtggcccggagcgacgcggcttggaggacatgttt
tccgatgacgatgaagaagccaacgagtctcgaccctacaaccgctccaactaccgatcc
caagccgatgaattcgacgactttattgaagaagactacccggaggacgaagacgaacgc
gcgcgccaacttgaagatgccgaggttgcccgacctcgtgacaagggggtgggaggtgtc
gtcgataccgctggtcttgataaagacgctttggaggatatggaggccatcttcggaaac
ggagaagactatgactgggctcttcagatggaggacgaagaagaagatcgtgagcgcgag
gagcaggtcattgagctcaaagatgtcttcgagccgtcgcaactcaaggagaagctcttg
accgacgaggacaaccagatccggtttacggacgagcctgaaaggttccagctggatcgg
aagcccttcaagcatttgcaaatcagcgctgagcaattcaaggaagaggctcggtggatt
gcgggcctgatgtggcccaaaaagctacttcaatccgagctgcatggacctttcactaag
gccatcggcaaggttctggagttcttcgtcgtcgatgacgtagaggtcccctatgttttc
cagcatcgcaaggactatctgattcacgcgaagaagacgaaaaacccagaccaccgcgat
gatcctgacgcccctgagtggattgtcagtgcagacaaattgctcacccaggacgatctg
tggcgcatcctagaactcgacatcaagttccggtcactcatcgagaagcggaatgctctg
gagaagacgctcgagaacctcaagtcgacttcgagcttcaaggacgccgtgctcgaggac
atgattcctcaggctgcaacaatggaggaactgcaagaccttcaagactaccttcatttc
cagtacgcctccgagctcaaggatatgtcctcgatcaacggcaatggtagtcagatgaag
cgcccaggctcaaaatcaaatcttttcgacagagtcaggcggagcaaggccttcggtttc
gtccgcgcttacggtatcactccggatcggttcgcccaaaacacgcttcgcgaagggaac
aaggtttgggccgacgacgacagccaacttccagacgatcttgcggactctcttaccgat
gaggagtttcaaactggcgatacagtcatgtacgctgctcgccaaatgtacgcagaagaa
ctcttcgtcaaccctcgtatgcgcaagcatttcagggtcaacttttatcaaatgggcgag
atcagttgtcgtcggacagagaagggcttgaagaagattgatgaatcgcacccgttctat
gaggtcaaatatctcatcaatcaaaccattgccgatgtcgctcgccagccggatctatat
ctcaagatgatgaaggctgaagaggaaggcctcattgaggtcaaacttacattggagaac
gacgatgggttcaagcgtcaattgcgccaggagttcatctcagacaactacagtgagctc
gctgatcgatggaacgaggaacgccaaaaggtcctcgaccttgtcgtcccccgtttgtcc
aagattatcgccaagggtgtcaaggagtcgcttcgcactgcctgccaggaggaggtcctc
aaaacctgccgtgaggaatactccaagaggctcgaccaagcaccgtacaaacccaagggc
atgattctgggcacggtgcctcgcatcatcactttgtccaacggcatggcggatccagct
cgtgaccccacatgttgggcctcggttgaggaagacggccgggtcattgagcagggcaaa
ctgggcaatctggctcgtgacgaacgtgctcgtgaagagtttgttgagattgtcaataga
cgccgccctgatgccattggtgtgagcgggtggtccgccgatacccagaagctcgtcaga
gacttggagagcttgatcagcgagaagggcctgatggggcccgagttcgatgaccctgag
cttggcgagtaccgcaccgagccgctcgaagtcattgtcgtgaatgacgaagtggctcgt
ctatacaaggacagtcctcgagcagtcgccgagcaccctaccctcagttccctcacaaga
tactgcattgccttggctcactacatgcagaacccgctcaaggagtatgcagccctcgga
aaggacgtcacttccctggctttccatccctgtcaaaacctgctgccccaagagaagttg
ctcaagcaccttgagtcggcaatggtcgacatggtcaacctctgcggtgtaaatatcaac
gaggccgtgggcgactcctatacggctaacctgctaccgtatgtcgcgggtctcggtccc
cgaaaagccacgagtgttatcaaagccatcaatgcaaacggcggagccgtcagcagcaga
gacgagcttgtcggcgaccccgacagcggaaagcttccggtggtgggccccagagtgtgg
aacaactgcgccagctttctgttcatcgactacgacgcaacgaatcccacctcagaccct
ctcgacaacactcgtgttcatcccgaggattacgagctgggccgcaagatggcagctgac
gctttggaacttgacgaggaagatgttaaggcggagactgatcacaacggtccaggggct
attgtccgcaagctgttcaaggaagacgaacaggagaaggttaacgaactcatcctggag
gaatacgcagagcaactcgaacggaactacagccagaggaagcgtgccacacttgaaacc
atccgcgctgagcttcaggcgccatacgaagagttacgccgcaactttgcacctcttgga
cctcacgatatcttcaccatgttcaccggtgagacgaaggatactcttgctcaaggcatg
atcatccctgtcaacgtacgcgtagttaaagacgatttcgccatcgtcaaactggactgc
ggcatagagggccgcatcgagtcacacgatggtcccgacggcgtacgggtcaggggtctt
ttgacaaatgggcagacggtgcaggccaaggttctcgagataaattacaaagactttctt
gccaagctctctgcgagagatgccgaggtcaaacgaccgtataagcgcccgctgtaccat
ggccatgggcagtgggacgagaggctggaggcggcggacagggaggagctccgcgaaaag
gacaagagtactggccgcacccagcgagtcatcaagcaccctctgttcaagcctttcaac
ggtttagaggcagagcaatggctcggcacccaggccgctggtgaggttattattcgtccc
tcctcaaagggtaatgatcatctagctatcacctggaaggtcgccgatggtgtctttcag
cacgtcgatgtccttgagctccaaaaggagaccgagttctccgtcggcaagctgctcagg
gtcggcggcaaattcacttacaaagatttggacgaattgatccatgagcacatagaggct
atgtcaaggaaggtggacgagatgatgcagcataaaaagtttgagaagcggtccaagacg
gatctcgagaaatggctcaccacgtatatggaggccaaccccgaccgctccgactacgct
ttctgcatcgaccctaagcaccccggctacttctggctctgcttcaaggccagtcgctca
tcgcgtgtcaactcgtggccggtccgtgtcattcccggcggtttcgagctgctcaagcag
gcttaccctgatatgagagcgctgtgcaacggctttaagattcggtaccagacggaaatc
actaagatgcagaagggcggtagatag
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integrated database retrieval system
