Colletotrichum higginsianum: CH63R_09105
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Entry
CH63R_09105 CDS
T08176
Name
(RefSeq) Not1 domain-containing protein
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
chig
Colletotrichum higginsianum
Pathway
chig03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
chig00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CH63R_09105
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
chig03019
]
CH63R_09105
Messenger RNA biogenesis [BR:
chig03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
CH63R_09105
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
CH63R_09105
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
DUF7310
WKF
HUN
Transcrip_reg
Motif
Other DBs
NCBI-GeneID:
28868186
NCBI-ProteinID:
XP_018156102
UniProt:
A0A1B7Y6F3
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Position
6:complement(2341220..2343278)
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AA seq
628 aa
AA seq
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MAARKLQQEVDKCFKKVAEGVAEFEAIYEKIEQSNNISQKEKLEDNLKREIKKLQRQRDQ
IKTWAASNDIKDKAPLLEHRRLIETQMEKFKAVEKAMKTKAYSKEGLASSAKLDPQEQAK
AEASDFLNNMVDELEQQIETLEAEAEAIQATMKKGKTQTAKAERMAEIERIIERHKWHQG
KLELIRRSLENGGVDTDQVTDLEETIRYYVSDGMNDDFVEDEEMYEELNLDEEEGVYGVP
QDGDKGSSQDTQSLAEEPTPEPEVIKPPPKPKAVADASASGRRSSAQSKSPLPALATLHT
PLQTISSNGAANGPTMKPASVPTRPAEGLKYASAAAAAAASDKIGISPLPPPPGAAPITT
GTPAAQSKSSAAGSPATTPAHPVAAKEPEPKPQSAAPSSIASEPQATIAKPTPAQTKAEK
RALKNQAAVEASAAAKASQTNGTRNGVKPAVGEEEEEESIYHLPSSLQDLVESFEASRKR
PAPFSSPSTQRMLQASQAMCPDIMDTDVPRTYRPELRLNSSAANFPQEPLALFDDPRLYS
RIDPDTLFYVFYYKQGTPQQYLAAKSLKDQSWRFHKQYQTWFQRHEEPKNITEEFEQGTY
RFFDYESTWMNRRKADFKFAYKFLEDDV
NT seq
1887 nt
NT seq
+upstream
nt +downstream
nt
atggcagcacggaaacttcaacaagaagtcgacaagtgcttcaagaaggtggccgaaggc
gtggccgagttcgaggccatctacgagaagattgagcagtccaacaacatctcccaaaaa
gagaagctggaggacaacctcaagcgcgaaattaagaagctacagagacagcgcgatcag
atcaagacatgggcggcaagcaatgatatcaaagacaaggctcctttactggagcaccgc
cgactgatcgagacgcaaatggaaaagttcaaggcggtcgagaaggccatgaagactaag
gcatactccaaggaagggttggcctcttcagcaaagctcgacccccaagaacaggcaaag
gcggaagcaagcgatttccttaacaatatggtggacgagctggagcaacaaatcgagacc
ctcgaagccgaagccgaggcgatacaggccaccatgaagaagggcaagacccagactgcc
aaggcggaacgaatggccgaaatcgagcgcatcatcgagcgtcacaaatggcatcagggc
aagctcgagctcatccggaggtctctggagaacggcggagtcgacacggatcaggtcacc
gacctcgaggagacgattcgatactatgtctcagatggcatgaacgacgatttcgttgag
gacgaagagatgtacgaagagctcaacctggatgaggaggagggcgtatatggcgttcct
caggacggcgacaaaggctcgtcgcaagacacccaatccttggcggaagaaccgacaccg
gaacccgaggtcatcaaacctcctccgaagccgaaggcggtggcggatgcttcggcatca
ggacggaggtccagtgcgcagtccaagtcccctctaccagcgctggcaaccttgcatacg
ccattacagaccatcagtagtaatggagctgcgaatggtccgaccatgaaacccgcatcc
gtccccacaagacctgccgagggcctcaaatacgcatctgcggcagcggccgcggcggca
tcagacaagattggcatttctcccttgccacctccgccgggcgccgcacccattacgaca
ggaaccccagccgcacaatcgaagagcagtgcggcagggtcccctgcaacgacgccggca
caccctgttgcggccaaggaaccagaacccaaaccgcagtccgcagcgccctcgagcatc
gcaagcgagccccaggcgacgattgcaaagccgacgccggcccagaccaaggcagaaaaa
cgtgcactcaagaaccaggccgcggtagaggcatcggcagcagccaaggcatctcaaaca
aacggcaccaggaatggagtcaagcccgctgtcggagaggaggaggaggaagagtcgatt
taccaccttccttcgtctctgcaagacctcgtcgagtctttcgaggcatctcgcaagcgg
ccagcgcccttctcttcgccctcgacgcagcgcatgcttcaggcaagccaggccatgtgt
cccgacatcatggacacggacgtgcccaggacgtaccgtcccgagctacgtctgaactcg
agcgccgcgaactttcctcaagagccgctagcattgttcgacgacccgcgactgtactcg
cgtattgaccccgacacactcttctacgtattctactacaagcagggcactcctcagcaa
tacctggctgccaagtcactgaaggaccagagctggagattccacaagcagtaccagacc
tggttccagcgtcacgaggaacccaagaacatcaccgaggagtttgagcagggcacgtac
cgcttcttcgactacgagagcacttggatgaaccgcagaaaggcggacttcaaatttgcg
tacaaattcctggaggacgatgtatga
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