Colletotrichum higginsianum: CH63R_10230
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Entry
CH63R_10230 CDS
T08176
Name
(RefSeq) RNA polymerase Rpb3/RpoA insert domain-containing protein
KO
K03011
DNA-directed RNA polymerase II subunit RPB3
Organism
chig
Colletotrichum higginsianum
Pathway
chig03020
RNA polymerase
chig03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
chig00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CH63R_10230
09124 Replication and repair
03420 Nucleotide excision repair
CH63R_10230
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
chig03021
]
CH63R_10230
03400 DNA repair and recombination proteins [BR:
chig03400
]
CH63R_10230
Transcription machinery [BR:
chig03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
CH63R_10230
DNA repair and recombination proteins [BR:
chig03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
CH63R_10230
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_L
Zn_ribbon_PriA
Motif
Other DBs
NCBI-GeneID:
28869311
NCBI-ProteinID:
XP_018154628
UniProt:
H1VTA9
LinkDB
All DBs
Position
7
Genome browser
AA seq
339 aa
AA seq
DB search
MDYEPMLLDGESGGPSIKISGADNIHVNFDLSNCDLSFANSLRRVIQAEVPVIAIDLVEI
EANTSVLADEFIAHRLGLIPLQSKDVNSLLYTRDCDCEQYCDNCSVKLTLHARCSSDETM
KVYASDLIVDSFRQNGTVGNPVILDPEGQGSLICKLRKGQELKISCIAKKGIAKEHAKWM
PTSAVGFEYDPHNKLHHLDMWFEEDAKAEWPESKYAKMEDPPQEGEPFDYDAVPSKFYFE
VEGVGSLEPDQIIQEGIKILQEKLALTLHILTGEADDDGMGDFDGPRSPNLDMDGGNPWQ
DQGYTTPFNGGGQSSWGASATTPYTTTTPYGASGQSGWN
NT seq
1020 nt
NT seq
+upstream
nt +downstream
nt
atggattacgagccgatgctgctggacggcgagtccggaggaccgtcgatcaagatctcg
ggggccgacaacattcacgttaacttcgatctctctaactgcgacctttccttcgccaac
tctctgcgtcgcgttatccaagccgaggtccctgtgattgccatcgacctggtcgagatt
gaggccaacacgtccgtcctcgctgacgagtttatcgcccatcgcctgggactgatcccc
ctccaatccaaggacgtcaacagcctgctctacacccgagactgcgactgcgagcaatac
tgcgacaactgcagcgtgaaactcacactgcacgcgcgctgttcatcggacgagaccatg
aaggtctacgctagcgatctcattgttgatagtttcagacaaaacggcactgtgggaaac
cccgtcatcctcgacccggaaggacagggctctctgatttgcaagctgcgcaaggggcag
gagctgaagatctcgtgtatcgcgaagaagggaatcgccaaagagcacgcaaagtggatg
ccgacgtccgccgtcggcttcgagtacgacccccacaacaagctgcaccacttggacatg
tggttcgaggaggatgccaaggctgagtggcccgaaagcaagtacgcgaagatggaggac
ccccctcaggaaggggagccgttcgactacgacgcggtacctagcaagttctactttgag
gtcgagggagtgggcagcctcgagcccgaccagatcatccaagagggaatcaaaatcctt
caggagaagctggctctgacgctgcacattctcaccggcgaggcggacgacgacggcatg
ggcgactttgatggccctcgcagcccgaatttggatatggacggcggcaacccctggcaa
gatcagggctacacgacccctttcaatggcggtggtcagagctcgtggggggccagcgcg
acgacgccttacacaactaccactccctacggcgcatccgggcagtctggctggaactga
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