Colletotrichum higginsianum: CH63R_10306
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Entry
CH63R_10306 CDS
T08176
Name
(RefSeq) Nonsense-mediated mRNA decay protein
KO
K14328
regulator of nonsense transcripts 3
Organism
chig
Colletotrichum higginsianum
Pathway
chig03013
Nucleocytoplasmic transport
chig03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
chig00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
CH63R_10306
03015 mRNA surveillance pathway
CH63R_10306
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
chig03019
]
CH63R_10306
Messenger RNA biogenesis [BR:
chig03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
CH63R_10306
mRNA cycle factors
P-body specific factors
CH63R_10306
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_1
Motif
Other DBs
NCBI-GeneID:
28869387
NCBI-ProteinID:
XP_018154704
UniProt:
H1VTI4
LinkDB
All DBs
Position
7
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AA seq
653 aa
AA seq
DB search
MATPGAQGTSRKTNGVLPVSGQQPAADAPKPNKSRTPVEGDKVIIRRLPPGMTEQELWNN
LGDEWKAGNGLVSWHNFAQGKISQDPAKPSRPGRVYLHVLKRESLNTLSTLIQAKSWEDA
KMTSNSPSLVGPPVLEFAIYNKVPGGKKRTDPRQGTIDQDPEFMSFLLSLTNPEMDKENE
GSESKDAEESKPEAKVTTTPLIEYIKEKKASKQKEAAAAKSAKQARQESNTKGKAPASTA
DDSKKGKKDTKGEKSADKPKETVKILTKKANAEAVKAAEAAASQIAQASSSSQDAPKSRR
AGIAAAARILQRDLGISPGSAHRRARLDAAKAEAEAKTTTTATATTKEPAQPAAEPATPA
PAPVAAPAQPSSAASQASERSTTPTAAKSGRSRRGGGGKNAGASESKGKSTEASSNAPAP
PAKAPVVLLKKKDEERNKEKATKADKADKDVSGSASQAAAPSTNAKSNPPAAPKSSGKGG
NSKKSSAAVTPGVTRGFVKHANPSQGVTEALLKQAMEVFGTVTFVEIDKRKGFAYVDFSD
HASLVRAVAASPVQVAQGTVQVLERKEKKAAAPNSNTKAEPGGANAESSAAATRSNSAAP
SASGSAKNATPSEKPEKPEHHKRTRRGRGGGKAAANASGSNSGNKDASAAGTG
NT seq
1962 nt
NT seq
+upstream
nt +downstream
nt
atggcaactcccggagcccaggggacatcgcgtaagacgaatggggtccttccggtctct
ggccagcaacctgctgcagatgcgccaaagcccaacaagagccggactcctgtcgaaggc
gacaaagtaatcattcgaagactcccgcctggcatgacggaacaagaactatggaacaat
ctcggcgacgagtggaaggcaggaaatggtcttgtcagctggcacaacttcgctcaggga
aagatctcacaagaccctgcgaaaccctcaaggccggggcgagtctatctccacgtcctc
aagcgcgagagtctcaacactctgtcaacgttgattcaagcgaaatcgtgggaggacgcc
aagatgacctccaacagcccgtctctggtcggccctccggttctcgagtttgcgatttac
aacaaggtcccgggcggtaagaaacgcaccgatcctagacagggaacgatcgaccaagac
cctgagtttatgtctttccttctgtccttgacgaatcccgagatggacaaggagaacgag
ggcagcgagagcaaggatgcggaggagtcgaagcccgaggccaaagtcacgacgacgcct
ctgatcgagtacatcaaggagaagaaggcgagcaagcaaaaggaagcggctgccgctaag
agcgccaagcaggctcggcaggaatcgaatacgaaaggcaaggcgccggcatcgacggcg
gacgattcgaagaagggcaaaaaggacaccaaaggcgagaagtcggccgacaagcccaaa
gagacggtcaagattctcaccaagaaggccaacgccgaagctgtcaaggctgctgaagct
gccgctagccagatcgctcaggcctcttcatcatctcaggacgcgcccaagagccggcga
gctggcatcgcggcggccgctcgaatcctgcaaagagatcttggcatcagtcctggaagt
gctcataggagggcacgactcgacgctgccaaggccgaggcagaagcgaagacgacgact
acggcgacagctacgaccaaagaaccagcgcaacccgccgctgaacccgcaacacctgct
ccggcacctgtcgccgcaccagctcaaccatcttcggcggcttctcaggcatcggagcgg
agcacaacgcccactgcggccaaatcaggtcgttctcgcagaggcggtggcggcaagaac
gcgggggccagcgagtccaagggcaagtcaaccgaagccagctccaacgcaccagcacca
cccgccaaggctcctgtcgtattgctcaagaagaaggacgaggagaggaacaaggagaag
gctacaaaggctgacaaggctgacaaagatgtatcgggttcggcatcacaggccgccgcg
ccgtcgacgaacgccaaatctaaccccccggcggccccaaagtcctcaggcaagggaggc
aactccaagaagagctccgcggccgttacccccggtgtgacacgaggctttgtcaagcac
gcgaacccctcgcagggcgttactgaggcgctcctgaaacaggcgatggaggtctttggc
accgtcacgtttgtcgagatcgacaagcgcaagggcttcgcctacgtcgatttctccgac
cacgcaagccttgtcagggcggtcgccgcgagtcctgttcaggttgcccagggcaccgtt
caggttctcgagcgcaaggagaagaaggccgcagcacccaactcgaacacgaaggcggag
cctggcggtgctaacgccgagtccagcgccgctgcgacgaggtccaactcagccgcgccg
tcggcgtccggttcagccaagaacgcgacgccgtccgagaagcccgagaagccggaacac
cacaagcgcaccagacgcggtcgcggtggcggtaaggccgcggcgaacgcgtcgggcagc
aacagcggcaacaaggatgcctcagctgcaggtacgggatga
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