Colletotrichum higginsianum: CH63R_10318
Help
Entry
CH63R_10318 CDS
T08176
Name
(RefSeq) helicase associated domain-containing protein
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
chig
Colletotrichum higginsianum
Pathway
chig03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
chig00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CH63R_10318
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
chig03041
]
CH63R_10318
03009 Ribosome biogenesis [BR:
chig03009
]
CH63R_10318
Enzymes [BR:
chig01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CH63R_10318
Spliceosome [BR:
chig03041
]
Complex A
U2 snRNP components
U2 related factors
CH63R_10318
Complex B
CH63R_10318
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
CH63R_10318
Ribosome biogenesis [BR:
chig03009
]
Eukaryotic type
90S particles
Helicases
CH63R_10318
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
Helicase_C
DEAD
HA2_C
AAA_22
HA2_N
SRP54
AAA_19
Cas3-like_C_2
Flavi_DEAD
GNAT-phage-like
NB-ARC
AAA_23
Motif
Other DBs
NCBI-GeneID:
28869399
NCBI-ProteinID:
XP_018154716
UniProt:
A0A1B7Y2E9
LinkDB
All DBs
Position
7
Genome browser
AA seq
773 aa
AA seq
DB search
MADADPKGFKRSSADRDGSLRKKAKKEEEADSEESKYNPYLAHMKEENGVKAEDGVIDAS
SPFAGFKPRATTAKQAEKVEDLDTNAFTGRPHSQKYFQIMQSRRDLPVQKQRQEFLDKYH
STQILVFVGETGSGKTTQIPQYVVYDELPQLNRKMIACTQPRRVAAMSVAQRVADEMDVE
LGEEVGYSIRFEDRTGPNTILKYMTDGMLLREAIHDHEMSRYSCIILDEAHERTLATDIL
MALLKQIAARRPDLKIIVMSATLDAQKFQRYFNDAPLLAVPGRTHPVEIFYTPEPERDYV
EAAIRTVLQIHASEGEGDVLLFLTGEEEIEDACRKINLEADEMTREIDAGPLAVYPLYGT
LPPHQQQKIFDKPPAPYKKGGRPGRKVIVATNIAETSLTIDGIVYVVDPGFSKQKIYNPR
IRVESLLVSPISKASAQQRAGRAGRTKPGKCFRLYTENAFKKELIEQTHPEILRSNLANT
VLELKKLGVEDLVHFDLMDPPAPETMMRALEELNYLACLDDDGELTTLGSLASEFPLDPA
LAVMLISSPEFYCSNEILSITSLLSIPQIWVRPAAQRKRADEMKAQFSHPEGDHLTLLNA
YHAFKGTASQPGVDPKKWCHEHFLSFRHLSSADNVRAQLKRIMETHGLELISTPFEDKNY
YTNIRRALLSGFFMQVAMKESSGKVYRTIKDDQAVMMHPSTVLKTDYEWVLYNEFVLTSK
QYIRTCTGIRPEWLMEIAPVYYDLDSFEKGDVKTALTRAAEKKRRKEAMKNGR
NT seq
2322 nt
NT seq
+upstream
nt +downstream
nt
atggccgacgccgatcccaagggcttcaagcgttccagcgccgacagagacgggagcttg
aggaagaaggccaagaaggaggaggaggcagactcggaagagtccaagtacaacccctac
cttgcacacatgaaggaggaaaatggcgtcaaggccgaggacggtgtcatcgatgccagc
tcgccctttgccggtttcaagccgcgcgcgaccacggccaagcaggccgagaaggtcgaa
gacctcgacaccaacgccttcaccggccggccccattcgcaaaagtacttccagattatg
cagtcgcgccgcgatctgcccgtacagaagcaaagacaagagttcctcgacaagtaccac
tccacccagatcctcgtcttcgttggtgagacgggttccggaaagacgacccagatcccc
caatatgtcgtctacgacgaactcccccagctcaaccgcaagatgatcgcctgtacccag
ccccgtcgtgtcgccgccatgtccgtcgcccagcgtgtcgccgatgagatggacgtcgag
ctcggcgaggaggtcggatacagcatccgttttgaggacaggacaggccccaacacaatc
ctgaagtacatgacggacggtatgcttctccgagaagccatccacgaccacgagatgtcg
cgctacagctgcatcattcttgacgaggcccacgagcgcactcttgccaccgatatcctc
atggccctgctcaagcagatcgccgcccgccgccccgacctcaagatcattgtcatgtcc
gccacgctcgatgcgcaaaagttccagcgctacttcaacgacgcgcccctcctcgccgtc
cccggtcgtacgcatcccgtcgagatcttctacacgcccgagcccgagcgagactacgtc
gaggcggccatcaggacggtgctgcagatccacgcctccgagggcgagggcgacgtcctc
ctcttcctgacgggtgaggaggagattgaggacgcgtgcaggaaaatcaacctagaggcc
gacgagatgacaagggaaatcgacgccggtccgctagccgtctacccgctgtacggcacg
ctgccgccgcaccagcagcaaaagattttcgacaagcccccggccccttacaagaagggc
ggccggcccggtcgcaaggtcatcgtggcgaccaacattgccgagacgtcgctgacgatc
gacggtatcgtctacgtcgtcgaccccggcttcagcaagcagaagatctacaacccccgc
atccgtgtcgagtcgctcctggtgtcgcccatctccaaggcctcggcccagcagcgtgcc
ggtcgtgccggtcgtacaaagcccggaaagtgcttccgtctgtacacggaaaatgccttc
aagaaggagctcatcgagcagacgcaccccgagatcctgcggtccaacctcgccaacacg
gtgctggagctgaagaagctcggcgtcgaggacctcgtccacttcgatctcatggacccc
ccggcccccgagaccatgatgcgcgcgctcgaggagctcaactacctcgcctgcctcgac
gacgatggtgagctgacgacgctcggtagcctggcgtccgagttccccctcgacccggcc
ctggccgtcatgctcatctcgtcgcccgagttctactgctccaacgagattctctccatc
acgtcgctcctgtccatcccccagatctgggtccgcccggcggcgcagcgcaagcgcgcc
gacgagatgaaggcgcagttctcccatcccgagggcgaccacctcacgctcctcaacgcc
taccacgccttcaagggcacggccagccagcccggcgtggaccccaagaagtggtgccac
gagcactttttgtcgttccgccacctcagcagcgccgacaacgtccgcgcccagctgaag
cgcatcatggagacgcacggcctcgagctcatctcgacgccctttgaggacaagaactac
tacacaaacatccgccgcgccctcctctcgggtttcttcatgcaggtcgccatgaaggag
agctccggcaaggtgtaccggaccatcaaggacgaccaggccgtcatgatgcacccgtca
acggtgctcaagacggactacgagtgggtgctctacaatgagttcgtcctgacctcgaag
cagtacatccgtacctgcaccggaatcaggccagaatggctgatggaaatcgctccggtc
tactacgaccttgactctttcgagaagggcgatgtcaagacggccctcacgcgggccgcc
gagaagaagcgccgcaaggaggccatgaagaacggccggtga
DBGET
integrated database retrieval system