Colletotrichum higginsianum: CH63R_11005
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Entry
CH63R_11005 CDS
T08176
Name
(RefSeq) Replication factor C
KO
K10756
replication factor C subunit 3/5
Organism
chig
Colletotrichum higginsianum
Pathway
chig03030
DNA replication
chig03410
Base excision repair
chig03420
Nucleotide excision repair
chig03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
chig00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
CH63R_11005
03410 Base excision repair
CH63R_11005
03420 Nucleotide excision repair
CH63R_11005
03430 Mismatch repair
CH63R_11005
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
chig03032
]
CH63R_11005
03036 Chromosome and associated proteins [BR:
chig03036
]
CH63R_11005
03400 DNA repair and recombination proteins [BR:
chig03400
]
CH63R_11005
DNA replication proteins [BR:
chig03032
]
Eukaryotic type
DNA Replication Elongation Factors
RFC (replication factor C)
CH63R_11005
DNA Replication Termination Factors
ELG1-RFC complex
CH63R_11005
Chromosome and associated proteins [BR:
chig03036
]
Eukaryotic type
Sister chromatid cohesion proteins
CTF18-RFC complex
CH63R_11005
DNA repair and recombination proteins [BR:
chig03400
]
Eukaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
RFC (replication factor C)
CH63R_11005
Check point factors
HRAD17(Rad24)-RFC complex
CH63R_11005
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rep_fac_C
AAA
DNA_pol3_delta2
Rad17
AAA_assoc_2
AAA_22
RCF1-5-like_lid
AAA_30
AAA_16
AAA_11
AAA_19
AAA_24
AAA_5
DUF815
RuvB_N
AAA_28
AAA_3
Sigma54_activat
Mg_chelatase
bpMoxR
AAA_14
PhoH
DEAD
AAA_7
ATPase_2
SLFN-g3_helicase
ResIII
AAA_18
TniB
nSTAND3
CCDC138_C
AAA_25
DNAX_ATPase_lid
MCM
RNA_helicase
Motif
Other DBs
NCBI-GeneID:
28870086
NCBI-ProteinID:
XP_018155403
UniProt:
H1V8A0
LinkDB
All DBs
Position
7
Genome browser
AA seq
392 aa
AA seq
DB search
MSDYDDEMDVDVPVSKDITFSSDAKQGKRSAANLPVEAEDSLPWVEKYRPVSLADVSGHQ
DILATINKFVDSNRLPHLLLYGPPGTGKTSTILALARRIYGAENMRQMVLELNASDDRGI
DVVREQIKTFASTKQIFTLGPSAKSGGGGSMASYKLIILDEADAMTNTAQMALRRIMEKY
TVNTRFCIIANYSHKLSPALLSRCTRFRFSPLKERDIRVLVDKVVEEEHVKILPEATDAL
VKLSKGDMRRALNVLQACHASSTPLQAKGAPKTAESDIVREMISTETIYNCIAAPQPDAV
REILDVLLSTTDVTSCLTTINTLKVARGLALADIITALAEQLATLEVKPEIMIQWLDGLA
DIEHRVAGGGSEAVQTGAVVGIIRGGAELMSK
NT seq
1179 nt
NT seq
+upstream
nt +downstream
nt
atgtccgactacgacgatgagatggacgtcgatgtccccgtgtccaaggacatcaccttt
tcttccgatgccaagcagggcaaacgcagcgctgccaacctgcccgtcgaggcggaggac
agcctgccatgggttgaaaagtaccgaccagtgagcctcgccgacgtgtctggtcaccaa
gacatcctcgcgacaatcaacaagtttgtcgactccaaccgcctcccccacctcctcctc
tacggccctccgggaacgggcaagacatcgacgatcctcgccctcgcgcgacgaatctac
ggtgccgaaaacatgcggcagatggtcctcgagctcaacgcctcggacgaccgcggcatc
gacgtcgtgcgcgagcagatcaagacgttcgcctcgacgaaacaaatcttcaccctcggc
ccctcggccaaatcgggcggcggtggcagtatggcgtcgtacaagctcatcatcctcgac
gaggccgacgccatgaccaacacggcgcagatggccttgcgccgcatcatggagaagtac
actgtcaacacgcggttctgcatcattgcaaactactcgcacaagctttcgcccgccctg
ctgtctagatgcacgcgctttcgcttcagcccgctgaaagagcgggacatcagggtgctg
gtggacaaggtcgtcgaggaggagcacgtcaagattctgcccgaggcgaccgacgccctt
gtgaagctcagcaagggcgacatgagaagggctctcaacgtgctccaggcatgccatgcg
tcgagtacacccctccaagcaaagggcgcccccaagacagccgaaagcgacattgtgagg
gaaatgatctcgaccgagacgatatacaactgcattgccgccccgcagcccgatgctgtc
cgggagatcctggacgtcctcctcagcacaacggacgtcacgtcctgcctgacgacaatc
aacacgttgaaggtggcgcggggtttggcgctggcggacattatcacggcgctcgcagag
cagcttgccacgttggaggtcaagccggagatcatgattcagtggctggacgggctcgct
gacattgagcaccgggtggcgggcggcggcagcgaagccgtgcagacgggggccgtcgtg
ggcatcattaggggcggggcggagttaatgagtaaatag
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