Colletotrichum higginsianum: CH63R_11348
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Entry
CH63R_11348 CDS
T08176
Name
(RefSeq) down-regulated in metastasis
KO
K14772
U3 small nucleolar RNA-associated protein 20
Organism
chig
Colletotrichum higginsianum
Brite
KEGG Orthology (KO) [BR:
chig00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
chig03009
]
CH63R_11348
Ribosome biogenesis [BR:
chig03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
CH63R_11348
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UTP20_N
UTP20
UTP20_C
TOR1L1_N
Motif
Other DBs
NCBI-GeneID:
28870429
NCBI-ProteinID:
XP_018153163
UniProt:
A0A1B7XY14
LinkDB
All DBs
Position
8:complement(1257760..1265708)
Genome browser
AA seq
2632 aa
AA seq
DB search
MPSTSSGRITKSHKGKFSTPHQKNHRWESFATKISKLNALDPLRKVRRHDLDAEDLESTT
SYFRNGLQRWGELNVSKGFNDFKRQALPVSETLAQILHFEEKIFALLEESLAKQDKEALE
PVLELLTAFAHDIGTRFEKYYAKSLDLIIAIAGKPQDADVIEWTFAALAFLFKYLSRLVV
PNLRPTYDVVAPLLGKARHPPHIARFAAEAMSFLIKKAAAPANRETALIDIASHARDDLR
SMVGERQFQLYQDGLMTMFAEAIKGPGQTIHSTGPAVLAALMKTIPETEADLTPNTTWTD
LVCGVLTSITHHSNDEDLAPVLDAMQEQVQEALSGSKPVKAWRFVPLIRVLGTAAGVRHG
SRVSNWNAMVENLTAMLDSMAQHAPEVTEDKLSLIWKHVIVNAAIVWHQAPIDALIPSIK
DFMTALQRERLMRWYIPFCAYFSNLDSTRFRSLFQTYFQRFIVSHWSDGRNEDMLCVFLP
RMVQNGSLPYPGGKETCNLPRSWQDQIVSKFERLEASPFPERGAYDKDPQTWRDRCLPKY
SALLDLLFSTTVHPSANAKIAELLLRKLRLALKPSSTLASDEVHFSISQGFHAYLRMSKA
AGPVDPALNPLLRAALPRFSRSVGFLEAYLTYTEATKSQPPLAERQSSDSSESSAEEDPV
VQALIENLSAPSHELRLASLKILQQFDSTPDELQCHTLMLDIAQTAMDLSSLRNVAMHLR
KLGQNYSQLSENSWLAKAIPSFMFGMLTIKLSPLWDDTITALKLVGESKKGEEAITATAF
NWLETPSPRWSGPGGQPTLQNRQAITDFDCRHVQQLWGMADHVEEVVNNATDLMLKSFDE
QQQTVDAHASNARAQALKVLTAMPHFAEKRSRKLVPSFLAWADDDEDTPDSQEDDDVQIK
GEDWSLQDRKALIGVFALFINPKVLYQNERVYRALLHLMENGDVEVQKLALKAILAWKQD
GVRPYQENLEYLLDEARFKNELTVFLQGESTIRPEHREELMPVLLRLLYGRTISKKGVSS
GRHGLQATRLAVLRNLNVEDTGSFLDIAIGGLKGARVIDESGFRASLFDKEILHPRKQLG
FMNMMLPLINELGAHVGPYVERLLHPILYCLIFACRRLRESAAELDEDAEETTEASQESM
LKVIRTTGLKCLITLFRNAQDFNWSPYSEPIVNEVVTPRIDKLPVETAQSVSSIMQLLST
WSQLPRAALFISINNQILPKVIECVSVPKGKENVKVFALSIVRNLVKLAQAPAQESEFNE
LIRAELLDANMELMLKTITTTLETLTMSNELLEACIETIVELSPLVETSANVHETLKIAT
FLLNQPPRRVNPRAKGKILLILERFITILGSEEAEEKTADIAIFETLSSLFSYFKDRDNR
QALARVLAALAEKDDTLQEVAEVCSDLNSFAKDRIDEPDYDKRLVAFTRITNKETPFTVK
QWLPLLHNLIYYIRSDEEYGILASNSADSLRKFIREAASCTDEAAKAGFESHLKTILLPS
IYTGAREESATVRREYLRVFGYLLSQMPTWELVADMKGLLVGELDEETSELPFFFNILSP
ATSRQLEAIRMLDTVNDSSEIGSQNLSQFFIPLLEHFIFGRAEGSDDQGLGAQATVTIGN
LAQSLDWKHYRVILQRYISYVESKPDNQKQVIRLLAKFCDALIFAVEQKAAEPMQVDSVE
TTSPSGKRLVLTTPAQDKLSKDVNNLFLPLLIKHLHEKDESEVSYRVPVGVIIVKLLKLL
PSEEMGQKLAGVLTDICHILRSKSWDAREMARDTLVQIASVLGPTYFGFILKELRGALKR
GYQLHVMSYTLHSMLLKVIPEYQQGDLDYTLRSIVAIIIDDIFGVIGQEKDAEGYISEMK
EVKASKSQDSMELIAKSASISQLVVLVHPLQSLLMQKVDLKLVRKIDTLLARITAGLLQN
PASESRDTLVFCYEVIQEVYKNQKPEVQPKIDYRLKKYLYQKGVKKDNHGTAGKYTFKLV
KFAFDILRSVWKKYDSLRTAANIAGFVPILGDAIVGGEEDVKTAAFRLLTVLAKVPFNND
EDVQLYKVAAKEATKSISMSTSTTTELSQAALKLLSVVLRERKDIPVKDAAIDMLLGKLK
DDLTETLYRHVTFNFLRSVLERKIETAVVYDTLDYVGTVMITNDDKDTRDLARGAFFQFL
KDYPQRKARWVKQLNFVVANLTYEREGGRLSVMEVVHLLLMKSADDFVQEVISTCFLPLV
MVLANDDSEKCCLAAGELVKEMFRKADKERTQNFLTLLRSWVEQEDNLAVTKLSLQAFGF
FFEAKEPSSKHKKELELVLSKIGEIVGTGDIRVADEELINTVLHDVQILTEKYPARLLSS
ESKELWGDVRGCLIHPENSVKLSTTKVLSTFLADYAGKSNKSGEALKGSHGLDLEVEDLE
ELVRVTLYALRTPEIEDALAAEITQILIFLGPRLPVKVQNVPEAETLGDRDETAAEEDRI
DEHRKDLQYLFWKLSSILRKDVRPKSTAITPKTVAMEVLETICRRVPQENLEPSFKTILY
PLQNLTDPHIPVPFSTDDLFKTRLETLKTRAHILMDSLQKKFGTAEYTKQLLAIREEVRT
RRQQRSSKRKIEAIAQPEKYGRDKRKKTEKKKERKKVRSHEHKQLRQAYKGW
NT seq
7899 nt
NT seq
+upstream
nt +downstream
nt
atgccttccacttcgtcagggcgtatcacaaagtctcacaagggcaagttctcgactcct
caccaaaagaaccaccggtgggagtctttcgcgacaaaaatctcgaaactcaacgcgctc
gatcccctgcgaaaagttcgtcgacacgatctcgatgccgaagacctcgaatccacaacc
tcctacttccgcaatggcctgcaaagatggggtgagctcaacgtctccaagggcttcaac
gacttcaagaggcaagcgttgcccgtgagcgagactcttgcccagattctgcacttcgag
gagaagattttcgccttgctggaggaatcactggcgaaacaagacaaggaggcactggag
ccggtgctcgaactccttacagcgtttgcgcatgatatcggcacgcggtttgagaagtac
tatgcgaagtctctggatctcatcatcgccatcgcgggcaaaccccaggacgccgacgtt
atcgaatggacctttgccgccctcgctttcctcttcaaatacctgtcgaggcttgtagtg
ccgaatttgcgcccaacgtacgatgtcgtggcgccgctcctgggcaaggctcgccatccc
cctcacattgcgcgcttcgccgccgaagcaatgagctttctcatcaaaaaggctgctgcg
ccagcaaaccgagagactgctcttatcgacatcgccagtcacgcgagggatgatctccga
agcatggtcggcgagcgccaattccaattataccaagacggtcttatgaccatgttcgcc
gaagcgattaaaggccccggtcaaactatccactcgaccggcccggccgttctcgcagcg
ttgatgaagacgatacctgagacagaagcagatctcacgccgaataccacctggaccgat
ctcgtttgcggtgttttgaccagcattacccatcactccaacgacgaggaccttgctcct
gttttggatgcgatgcaagaacaagtacaggaagctttgagcgggtctaagcccgtcaag
gcgtggaggtttgtccccctgatccgggttcttggcacggcggccggtgtgcgacacgga
tctcgagtaagcaactggaatgctatggttgagaacctgaccgcgatgttggattcgatg
gcgcaacacgcccctgaggtaacggaggacaagctgagtcttatttggaaacacgtgatt
gtcaatgctgccattgtctggcatcaagcgccgatagatgccctgattccctcgatcaag
gacttcatgactgccctccagagggagcggctcatgagatggtacatccccttctgtgcc
tacttctccaacctcgactcgacgcggttccgaagtctcttccagacatacttccaaagg
tttattgtcagccactggtccgacggccgtaatgaagacatgctctgtgttttcttaccg
cgtatggtccaaaatggtagtctaccttatccgggcgggaaagagacttgcaaccttccg
cgaagctggcaggaccagatcgtgtccaagtttgaacgcctcgaggcatctcctttcccc
gaacgcggagcgtatgacaaagatccccagacatggcgtgacagatgcctgccgaagtac
tcggcgttgctggatctgctcttctctacgaccgtccacccttcggccaacgccaagatc
gcggaactcctgcttcggaagttgaggcttgcactcaagccgtcgtccacgctggcgtcc
gacgaggtgcatttcagtatcagtcaaggcttccacgcctacctgcgcatgagcaaagca
gcaggcccagtcgaccctgcattgaacccgcttcttcgagctgctttgcccagatttagc
cgttcagtaggctttttggaggcatatctcacttacaccgaggccacaaagagccagcca
ccacttgccgaacgccagagtagcgacagtagcgagagctcggccgaagaggatcctgtt
gttcaggcgctcatcgagaatctgtcggctccttctcacgagcttcgtctcgcgtcactc
aagatcctccaacaattcgactcaaccccggatgagctccagtgccacaccctcatgctg
gatatagcacagacagctatggacttgtccagcctgagaaacgttgccatgcatctccgc
aaactcggtcagaattactcacagttgagcgaaaactcgtggttggccaaggcaatcccc
tcctttatgtttggcatgttgacaatcaagctctcgcccctgtgggatgacactattacc
gcactcaagcttgttggcgagtccaagaagggcgaggaggccattactgcgactgccttc
aactggctagaaacaccctcccccagatggtctgggccaggtggccagcctacgctccag
aaccgccaagcgatcaccgactttgactgtcgacatgtgcaacagctttggggcatggca
gatcatgtcgaggaggtggtgaacaacgccaccgatctcatgctcaagtcatttgacgaa
caacaacagactgtcgacgctcacgccagtaatgcgcgtgcgcaagctctgaaggtccta
accgctatgcctcacttcgcggagaagcgttcccgcaagcttgtgccgtccttcttggcc
tgggccgatgacgacgaagacacccctgacagccaagaggatgatgatgtccagatcaag
ggcgaagactggtcgctccaggaccgcaaggcgctcattggtgtctttgctctcttcatc
aaccccaaggtactctatcagaacgagagggtgtaccgcgcccttctccatctcatggag
aacggtgatgtggaagtgcagaagctggccctgaaggccattctcgcatggaagcaggat
ggcgtacggccctaccaagaaaacttggagtacctccttgatgaggccaggttcaagaac
gaactcaccgtcttccttcagggagagtcgaccatccgacccgagcaccgcgaagagctg
atgcctgttctcctcagactcttgtacggccgcactatctcgaaaaagggtgtttctagc
ggccgccatggtctgcaggctacccgtttggccgtcctgagaaatcttaacgtggaagac
acgggcagcttcttggacatcgccatcggtggtctgaagggtgctcgcgttatcgacgag
tccggtttccgcgccagcttgttcgacaaggagattctccatccccgcaagcagctaggt
ttcatgaacatgatgctgcccctcattaacgaacttggcgcacatgttggtccttacgtc
gagagactcctccacccgattctctactgtctcatttttgcttgccgacgactccgagag
tctgccgctgaattggacgaggatgccgaagaaacgaccgaagcctcccaagagtctatg
ctcaaggtcatccggaccaccggtctgaagtgcttgatcacactgttccgcaacgcgcag
gacttcaactggtctccctattcggagcctatcgtcaacgaggtcgtcacgcccagaatc
gacaagcttcccgtcgagacggctcagtcggtatccagcatcatgcagcttctgtcaacg
tggtctcagctccccagggctgcactgttcatctcaatcaacaaccagatcctgcccaag
gtcattgagtgtgtctccgtacccaagggcaaggagaatgtcaaggtatttgccttgagt
atcgtccgtaacctcgtcaagctagcacaggcccctgcccaggagtccgagttcaacgag
ctcatccgggccgagcttctggatgccaatatggagttgatgctcaagacgatcaccacc
acactggagacgctcaccatgagcaacgagctcctcgaggcctgcatcgagaccattgtg
gagctttctccgcttgttgagacctctgcgaatgtgcacgagacgctcaagattgccacg
ttcctcctaaaccagccccctagaagagtcaaccccagagccaagggcaaaatcctgctc
atcctcgagcgctttatcaccattcttggctccgaagaggccgaggagaagacggctgac
atagccatcttcgagaccctgtcttccctcttcagttacttcaaggacagggacaacaga
caagccttagcccgcgttctcgccgccctcgccgagaaggacgacacgcttcaggaagtt
gccgaagtttgcagtgacctcaactctttcgcgaaagaccgcatcgacgagcctgactac
gacaagcgactggtggctttcactcgaatcaccaacaaggaaacccctttcactgtgaag
cagtggcttcctttactccacaacttgatttactacatccgctcggatgaggagtatggt
atcctcgcctctaactctgcagacagcctgcgcaagttcatcagagaggcggcttcctgc
accgatgaggctgcaaaggccggtttcgaatcccatctgaagaccatcctgttgccctcc
atctacacgggagctcgagaggagtccgccaccgtccggcgagagtacctgagagtgttc
ggctatcttctctcgcaaatgcccacgtgggagctcgtggctgatatgaagggactcctg
gtcggcgagcttgacgaggagacgtccgagctgccctttttcttcaacatcctcagcccg
gcaacctcacgacagctcgaagctatccggatgctcgacaccgtcaacgacagctcggaa
attggcagccagaacctcagccagttcttcatccctcttctggagcattttatctttggt
cgtgcagaaggaagtgatgaccagggcctgggcgctcaagcaacggtcacgattggcaat
ttggcccagtctctggattggaagcactaccgcgtcatcctgcagagatacattagctac
gtcgagtccaagcccgacaaccagaagcaggtgatccgactcctcgccaagttctgcgac
gccctcatcttcgctgttgaacagaaagccgccgagccaatgcaggtggacagcgtggag
acaacctcaccttccggcaagagactcgtgctcacgacacccgcgcaagataaactcagc
aaggatgtcaacaacctcttcctgcctttgctgatcaagcatctgcacgagaaggacgag
tccgaggtcagttaccgtgtgccggtcggtgttatcatcgtcaagcttcttaagcttttg
ccgtctgaagagatgggccagaaacttgctggtgttcttaccgacatctgccacattttg
cgaagcaagtcctgggatgctcgtgagatggccagagacactcttgttcagattgcctcg
gtgctgggcccgacctacttcgggttcatcttgaaggagctgcgtggcgctctcaaaaga
ggttaccagctccatgtcatgtcctacactcttcactcgatgcttctcaaggtcatcccc
gaataccaacaaggtgacctggattacactctgcggtccatcgtggcaatcatcatcgac
gacatctttggtgtcattggccaagaaaaggatgccgagggttacatcagcgagatgaag
gaagtcaaggccagcaagagtcaggactccatggagctcatcgccaagtcggcctccatc
agccagctcgtcgtccttgtacaccccttgcaatccctcctcatgcagaaggttgatctc
aagctggttcgcaagatcgacaccctgttggcgagaataaccgccggtctcctgcagaat
cccgcctcagagagccgtgacactctggtcttctgctacgaagtgattcaagaagtctac
aagaaccagaaacccgaggtgcagccgaaaatcgactaccgtctgaagaagtacctctac
cagaagggcgtcaagaaagataaccacggcacagccggcaagtacaccttcaagctcgtc
aagttcgccttcgacatcctgcggtctgtgtggaagaagtacgacagcctgcgaaccgct
gcaaacattgctggttttgtccccattctcggtgacgcaatcgtgggtggcgaggaggat
gtcaagactgcagccttcagacttctcacggttctggccaaggttcccttcaacaacgac
gaagatgtccagctgtacaaggtcgcggccaaggaggcgacgaagagcatttccatgtcg
acctcgaccaccaccgagctttcgcaggctgctctgaagctgctctcggttgtgctgcgc
gagcgcaaggatattcctgtcaaggacgcggcgatcgatatgctgctcggcaagctgaag
gatgacctgacagagaccctttatcgtcatgtcacgttcaacttcctccgatctgtgctc
gagcgcaagattgagactgcggtcgtctacgacacactcgactacgtgggcactgtcatg
atcaccaacgacgacaaggatacccgggacctggcaagaggagcgttcttccagttcctc
aaggactacccgcagaggaaggctcgctgggtcaagcagctcaactttgtcgtcgccaac
ctgacctacgagcgcgagggtggccgtctgtccgtcatggaggtcgtccatcttctgctg
atgaagtccgcggatgactttgtccaagaagtcatttccacttgcttcttgcctctcgtc
atggtgttggccaacgacgacagtgagaaatgctgccttgctgccggcgagctcgtcaag
gagatgttccgcaaggccgacaaggagaggacgcagaacttcctgacgcttctccggtcg
tgggttgagcaggaggacaaccttgcggtgacgaagctgtcgttgcaagcctttggcttc
ttctttgaggccaaggagccttcatctaagcacaagaaggagctggagctggttctcagc
aaaatcggtgagattgtcgggactggcgacatccgcgttgccgacgaggaactcatcaac
accgttcttcacgacgtccagatcctcacggagaaatacccggcaagattgctgtcctcc
gagtcaaaggagctttggggagacgtgcgtggctgcctgatccatcccgagaactcggtc
aagctgagcaccaccaaggtgctgagcacattccttgcggactacgccggcaaatccaac
aagtcgggagaggcactcaagggatcgcatggcctggaccttgaggtcgaggacctcgag
gagctggtcagggtgaccctgtacgctctgagaacccccgagatcgaagacgcgctcgcc
gcggagattacgcagatcctcatcttcctcggtccccgtctgcctgtcaaggtgcagaac
gtgcccgaggcggagacgctgggagaccgcgacgagacggcggcggaggaggaccggatc
gacgagcaccgcaaggaccttcagtacctgttctggaagctctcgtcgatcctgcgcaag
gacgtccggcccaagtcgacggccatcacgcccaagacggtggccatggaggtgctggag
accatctgccgccgcgtgccgcaggagaacctcgagccgtcgttcaagacgatactgtac
ccgcttcagaacctcacggacccccacatccccgtgcccttttcgacggacgacctgttc
aagacacggctcgagacgctcaagacgcgggcgcatatcctcatggactcgctgcagaag
aagttcggcacggccgagtacaccaagcagctgctggcgatcagggaggaggtgcggacg
aggaggcagcagaggtcgagcaagcgcaagatcgaggcgatcgcgcagccggagaagtac
ggccgggataagagaaagaagacggagaagaagaaagagaggaagaaggtccgtagccat
gagcacaagcagctcagacaggcgtacaaggggtggtaa
DBGET
integrated database retrieval system