Colletotrichum higginsianum: CH63R_11631
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Entry
CH63R_11631 CDS
T08176
Name
(RefSeq) mRNA cleavage and polyadenylation specificity factor complex subunit
KO
K06100
symplekin
Organism
chig
Colletotrichum higginsianum
Pathway
chig03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
chig00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
CH63R_11631
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
chig03021
]
CH63R_11631
03019 Messenger RNA biogenesis [BR:
chig03019
]
CH63R_11631
Transcription machinery [BR:
chig03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
CH63R_11631
Messenger RNA biogenesis [BR:
chig03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
CH63R_11631
U7-dependent histone pre-mRNA processing factors
CH63R_11631
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SYMPK_PTA1_N
Motif
Other DBs
NCBI-GeneID:
28870712
NCBI-ProteinID:
XP_018153446
UniProt:
A0A1B7XYS0
LinkDB
All DBs
Position
8:<2169136..>2171657
Genome browser
AA seq
745 aa
AA seq
DB search
MAAPSSQASVNDQIRQLNDARKLVLGDVKYYPTVVKSILPIVGPTARVELRRWGADFLAE
AFSTPALPGSEKETMQLFVLDTLQSMVETPNEDPHVLRSAIQTAASIYPFALRWIINNSY
DNLTWERVVAIKTRILQIWSEAESTVRICCIKFAQRVVLAQSVANPSEPRRGDSLDISLD
KIPPNHQTLDVMTLDAEGVGLLDRMLSVLQENSSDVLLVDATLNCLSILIRSRPGTANRI
LTAVLNFNPMKLANSPMTPRTRVIVKSMEKTTRMLLIHLSKRYSPARLPCLPPSLLTLQR
SDPHGPMAPRIQQHVERMMRMRHEIFDESGRKRAFEAQQHAEMDAKRQRVAPQVATTPQI
QVTPLPPGPHSLGDVFTLTGSEGLKAFDVGTLPTAMAAKISITTLIRTDAQLLTMAIEGI
RGRLAALAAQPAPQINPETAPLGVEEDDDYEPDFAAAEDNEQILNKLDSDPVARPDDHDL
GLRTFKLPPPPALTPELALSAGQGSVMSLFQFVKTLEDPGKRSKSGINRLAASTNDRESW
IAIITRLASRSSADLEEFGTKDETSESVSGLSLGNSIRDSLYTYVLEDFRRRIDVAITWL
HEEWYNDQLQKKQEGNHPLHYEKWALKLIDGFSQYLNAQDKVLTRFLGEVPELSPAILSR
VKLMCRDPLVVPLALTSLLYLVMMRPPAKELALDTVQDIWTEYEDARPLAAKYLVKFRPS
WLASAKAVAEGGGTAVTNNATAITT
NT seq
2238 nt
NT seq
+upstream
nt +downstream
nt
atggcggctccatcctcacaggcgtccgtgaacgaccagattcgccagctcaacgacgca
aggaagctcgtcttgggcgacgtcaagtattatccaaccgttgtcaagagcattctgccc
atcgtcggacccacagcgcgcgttgaactccgaagatggggcgccgacttcctggccgag
gccttttcgacgcccgcgctaccgggcagcgaaaaggagacaatgcagctcttcgtgctg
gacacgctgcagagcatggttgagaccccgaatgaggatccccacgtactgcggagcgcc
attcagacggccgccagcatctatccctttgcgctgcgatggatcatcaacaactcgtac
gataacctcacgtgggaacgggtggtcgcaatcaagacacgcattcttcagatatggagc
gaggccgagtcgacggtgaggatatgctgcatcaagtttgcgcaacgagttgtcctcgca
caatcggtggccaacccaagcgaaccaagacgaggtgattcccttgacatttcactcgac
aagatcccgccaaaccatcagacgctagatgttatgaccctcgacgccgaaggagttgga
ttgctggacaggatgttgagcgtgttgcaggagaacagcagtgatgttcttctcgttgat
gccaccttaaactgcctgtccatcttgatccgcagtcggccgggaacggccaacaggatc
ctgactgccgtgctcaacttcaatcccatgaagctcgcgaactcgcccatgactcctaga
acccgtgtgattgtcaagtccatggagaagacgactcgtatgctcttgatacatctgtca
aaacggtacagcccagcgcgccttccgtgtttgccgccttccctgctaaccttgcaacgc
agcgacccccacggcccgatggcgcctcggattcagcagcatgtggagagaatgatgcgc
atgaggcacgaaatcttcgacgagtccggtcgcaaacgggctttcgaagctcaacagcac
gccgagatggacgccaagcgccagcgggttgcaccccaagtggcgacgacgccgcagatc
caagtcacaccactaccgccaggccctcacagcttgggtgacgtcttcactctcacgggc
agtgaaggactgaaggccttcgatgtgggcacactcccgacggcaatggccgcgaaaatc
agcatcaccacgctcatccgcacggatgcgcaacttctcacaatggcaatcgagggtatt
cggggacgactcgccgctctggcagcacaacccgcaccgcaaatcaaccccgagactgct
cctctgggcgtcgaagaggatgacgattacgaaccggatttcgccgccgctgaagataat
gagcaaattctgaacaagctcgacagcgatcctgtggccagaccagatgaccacgacctt
gggctgaggacgttcaagctgccgcctccacctgcgctcacgccagaattggcgctaagc
gcgggtcaaggctcagtcatgtccctgttccagtttgtcaagacgctggaagaccctggc
aaaaggtccaagtctggtatcaaccgactggcggctagtaccaacgaccgagaatcctgg
attgccatcattacccgtctggctagccgttcgtcggcagatttagaggagttcggcacc
aaggacgagaccagtgaatcagtgtcgggattgtctctcggcaacagcatcagagactcg
ctgtacacgtatgtacttgaggatttccggcgacgtatcgacgtcgccatcacttggttg
cacgaagagtggtacaacgaccagctgcaaaagaagcaagagggaaaccatcctctgcac
tacgagaaatgggcgctcaagttgattgacggtttctcgcaatacctcaatgcccaggac
aaggtcctcacccggttcttgggtgaggtccctgagctcagccccgccatcctgtctcgc
gtcaagctcatgtgtcgcgatcctctggtggtgcctctggctctgacgagtctattgtac
ctggtcatgatgcgaccaccggccaaagagcttgccttggacacggtccaggatatctgg
acagagtatgaggatgcgcgaccactggcggcgaaatacttggtcaagttccggccgtcc
tggctagcatcagccaaagcagtagcagagggtgggggcactgcagtaacaaacaacgca
acggcaatcacaacataa
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