Colletotrichum higginsianum: CH63R_11940
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Entry
CH63R_11940 CDS
T08176
Name
(RefSeq) Coatomer subunit alpha
KO
K05236
coatomer subunit alpha
Organism
chig
Colletotrichum higginsianum
Brite
KEGG Orthology (KO) [BR:
chig00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
chig04131
]
CH63R_11940
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
chig04147
]
CH63R_11940
Membrane trafficking [BR:
chig04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Coat protein complex I (COP-I)
CH63R_11940
Exosome [BR:
chig04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
CH63R_11940
Exosomal proteins of bladder cancer cells
CH63R_11940
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
COPI_C
B-prop_COPA_B_2nd
WD40_Prp19
WD40
WD40_WDHD1_1st
Beta-prop_EML_2
TPR_COPA_B
WD40_CDC20-Fz
WDR55
Beta-prop_WDR90_POC16_2nd
EIF3I
Beta-prop_EIPR1
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_C
Beta-prop_TEP1_2nd
Beta-prop_EML
Beta-prop_WDR75_1st
WD40_RFWD3
WD40_MABP1-WDR62_1st
Beta-prop_SCAP
ANAPC4_WD40
WD40_MABP1-WDR62_2nd
Beta-prop_SPT8
Beta-prop_DCAF4
Beta-prop_Nup120_160
NBCH_WD40
Beta-prop_IFT122_1st
Beta-prop_IFT140_1st
Beta-prop_RIG_2nd
TPR_IFT80_172
Motif
Other DBs
NCBI-GeneID:
28871021
NCBI-ProteinID:
XP_018153755
UniProt:
H1VJI1
LinkDB
All DBs
Position
8:3288697..3292675
Genome browser
AA seq
1214 aa
AA seq
DB search
MQASSGMLTKFESKSSRAKGIAFHPKRPWILVALHSSTIQLWDYRMGTLIDRFEEHDGPV
RGIDFHKTQPLFVSGGDDYKIKVWSYQTRRCLFTLNGHLDYVRTVFFHHELPWILSASDD
QTIRIWNWQNRSLICTMTGHNHYAMCAQFHPKEDLIVSASLDQSVRVWDISGLRKKHSAP
TSMTFEDQVARSNQNQADMFGNTDAVVKFVLEGHDRGVNWVAFHPTMPLIVSAGDDRLVK
LWRMSETKAWEVDTCRGHFQNASGCLFHPHQDLILSVGEDKTIRVWDLNKRTAVQSFKRE
NDRFWVIAAHPEINLFAAGHDNGVMVFKLERERPASSVYQNNLFYITKEKHVKSYDFQKS
IESPTLLSLKKLGSPWTPPRTLSYNPAERSVLVTSPSDSGSYELINLPRDGSGAIEPTES
KRGQGNSAIFVARNRFAVLNTSSQTIDIKDLSNNTTRSFKPPVGTSDIYFGGTGNLLIIT
PTAVHLYDIQQKKSVAELAVNGVKYVVWSNDGLYAALLSKHNVTIVTKTLEQVSTLHETI
RIKSATWDDAGVLLYSTLNHIKYTLLNGDNGIVRTLDQTVYLVRVKGRNVYCLDRAAKPK
VLHVDPTEYRFKLALVKRNYEEMLHIIQNSSLVGQSIISYLQKKGYPEIALQFVQDPTTR
FELAIECGNLDVAVEMAKELDRPKLWQRLSGEALAHGNHQVVEMAYQKLKQFDKLSFLYL
STGDHSKLARMAKIAEHRGDFTARFQNALFLGEVEDRIQMFKEIDLYPLAYMTAKSHGLE
EECQAILEATGLTEEQLETPTIGEALTPPKPVVPTFKANWPTKATSQSVFEKALLGQVEG
LSLDDAPAAANGFDDAAEDDGTAKKNGNLIDVDDEEDAAGWDLGDDVVPEIEGDFVNVDS
AEAGGAGSSEADLWARNSPLAVDHVAGGSFESAMQLLNRQVGAVNFAPLKPRFLEVYQAS
KTYLPASANLPPLVNYVRRTIDETDPRKVLPIVPRDLEFLATNDLQQGYNSMKTNKLEDG
LKVFKGILHAILINAVSSESEVAEAKKLITSASEYAVAMEIELSRRQLGTTGEQLKRGLE
LSAYFTIPKIEVPHRQLALHNAMQLAIRNKNYGSALSFANRIIANGGSSKLTENAKKAKA
QCERNPSDAIEIEFDQFAEFDVCAASHTPIYSGTAYEECAFDGSKYHSKYKGTVCKVCEV
CEIGKHGSGLKLFA
NT seq
3645 nt
NT seq
+upstream
nt +downstream
nt
atgcaggcctcctcgggcatgttgaccaagttcgagtccaagtcctcgcgcgccaagggc
atcgccttccatcccaagagaccatggatcctcgtcgcgcttcactcctccaccatccag
ctctgggactaccgcatgggaacattgatcgaccgattcgaggaacacgatggccctgtt
cgaggaattgacttccacaagacgcagcccctcttcgtgtcgggaggcgacgactacaag
atcaaggtctggtcctaccagacccgccgatgcctctttacattgaacggacatctcgac
tacgtccgcaccgttttcttccatcacgagctgccatggatcctgtccgcctccgatgac
cagaccatcaggatatggaactggcaaaatcgctccttgatctgcacaatgacaggacac
aaccactacgccatgtgcgctcagttccatcccaaggaggacctcatcgtctccgcctcc
ctcgaccagtccgtccgcgtctgggacatttccggcttgcgcaagaagcactcggcaccc
acatcgatgactttcgaagatcaggtcgcccgctcgaaccagaaccaggccgatatgttt
ggtaacaccgacgccgttgtcaagtttgtgttggaaggccatgaccgtggtgtgaactgg
gttgcgttccatcccaccatgcccctcattgtctctgctggcgacgacaggcttgtcaag
ctttggcgtatgagcgagaccaaggcttgggaggtcgatacttgcagagggcatttccag
aacgcatctggctgcttattccatccccaccaagacctgatcctctccgtcggcgaagac
aagaccatccgcgtctgggacctcaacaaacgcaccgctgttcaatcattcaagcgcgag
aacgaccgattctgggtcattgctgcccaccctgagatcaacttgttcgccgctggccac
gacaacggcgttatggtcttcaagctcgagagagagagaccggcatcttcggtgtaccag
aacaacctcttttacatcaccaaggagaagcacgtcaaatcgtacgacttccagaagagc
attgagagcccgactctcctgtcgctcaagaagcttggcagcccctggaccccaccgcga
actctttcctacaaccctgctgagcgctccgtgcttgttacatctccctccgacagcggg
tcgtacgagttgattaacctccctcgcgatggatccggtgcgatcgagcctacggagtcg
aagcgtggccagggcaactcagccatcttcgtcgcgcgcaaccgctttgccgttttgaac
acctccagccagacgatcgacattaaggacctgtccaacaacacgactcggtccttcaag
cctcctgttggaacgagcgatatctacttcggtggtactggcaacctcctcatcattacc
ccgacagctgttcatctatacgacatccagcaaaagaagagcgttgccgagctggcagtc
aacggtgtcaagtacgtggtctggtcgaacgatggcctttacgccgctctcctgagcaag
cacaacgttaccattgtcacaaagacacttgagcaagtcagcacactgcatgagactatc
cgcatcaagagcgcaacttgggatgacgctggtgttctgctgtactcgactctcaaccat
atcaagtatacgcttctcaacggcgacaacggcatcgtccgcaccctcgaccagactgtt
tacctggtccgcgtcaagggccgcaatgtgtactgcctggacagagcggcaaaacctaag
gttcttcacgttgacccgaccgagtaccgattcaagcttgcgctagttaagcgaaactac
gaggagatgcttcacatcattcagaactccagtctcgtcggtcaatccatcatctcttac
ctccagaagaagggctaccccgaaattgctctccagtttgtgcaagaccccacgacccgc
ttcgagctcgccatcgaatgcggaaaccttgatgttgccgttgagatggccaaggagctg
gaccgccctaagctgtggcaaagactgagcggggaagctttggcccatggcaaccatcaa
gtcgtcgagatggcctaccaaaagctgaagcagttcgacaagctatcctttttgtacctg
tctactggtgaccactccaaacttgctcgcatggccaagatcgccgagcaccgcggtgac
ttcactgcaaggttccaaaatgccctgttcctcggcgaggttgaagaccgaatccagatg
tttaaggaaattgatctttacccgttggcgtacatgaccgccaaatctcatggccttgag
gaggagtgccaagccattcttgaggcaactggtctcacggaggagcagcttgaaaccccg
acgatcggagaggcgctgacgccaccgaagcctgtggtacccacattcaaagccaactgg
cccacaaaggcgacctcgcaatcggtgtttgagaaggctctgttgggccaggttgagggc
ctgtctttggatgacgcgcctgccgctgccaatggcttcgacgatgccgccgaagacgac
ggtactgccaagaagaacggcaaccttatcgatgtcgacgatgaagaggatgccgcaggc
tgggatctgggcgatgatgtcgttcccgagatcgagggcgacttcgtgaacgttgacagc
gcagaggcaggaggtgctggcagcagcgaggccgatctctgggctcgcaactcccctctt
gctgtagatcatgttgcgggtggctcgttcgagtcggcaatgcaactgctcaacagacaa
gtgggagccgtcaactttgcgcccttgaagccccgcttccttgaagtttaccaggcatca
aaaacatatctgccggcctctgctaatcttcctccgttggtcaactacgtgcggcgcacg
attgacgagacggaccctagaaaggtgctgccgattgtacctcgcgatctcgagttcctg
gctaccaacgaccttcagcaagggtacaactctatgaagacgaacaaactcgaggatggt
cttaaagtcttcaagggcatccttcacgccatcctcatcaacgccgtgtccagcgaaagc
gaggtggccgaggccaagaaactcatcacatccgctagcgagtatgctgtggctatggag
attgagctcagccgtcgccagcttggcaccacgggcgagcaacttaagcgcggtcttgag
ctctctgcctatttcaccatccccaagatcgaggttccccaccgacagcttgccctgcac
aacgcgatgcagctcgcgataaggaacaaaaactacggatcagccctcagcttcgccaac
cgcatcattgccaacggcggctcgagcaagctgacggaaaacgccaagaaggcaaaggcg
caatgcgagcgtaacccctcggatgccattgagattgaatttgaccagtttgccgagttt
gacgtctgcgcggcaagccacacacccatctacagcggtactgcatacgaggagtgcgcc
ttcgacggttccaaataccacagcaagtacaaaggcaccgtctgcaaggtttgcgaggtc
tgcgagattggtaagcacggcagtggcctgaagctctttgcgtaa
DBGET
integrated database retrieval system
