Colletotrichum higginsianum: CH63R_12117
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Entry
CH63R_12117 CDS
T08176
Name
(RefSeq) WD repeat domain-containing protein
KO
K20184
vacuolar protein sorting-associated protein 41
Organism
chig
Colletotrichum higginsianum
Pathway
chig04138
Autophagy - yeast
chig04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
chig00001
]
09140 Cellular Processes
09141 Transport and catabolism
04138 Autophagy - yeast
CH63R_12117
04148 Efferocytosis
CH63R_12117
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
chig04131
]
CH63R_12117
Membrane trafficking [BR:
chig04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
CH63R_12117
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_Vps41
Beta-prop_Vps41
Clathrin
Vps39_1
Beta-prop_EML_2
zf-RING_Vps41
YL1
BUD22
zf-RING_5
NBP1
TPR_PEP5_VPS11
WD40_like
zf-RING_UBOX
zf_RING_Vps8
Motif
Other DBs
NCBI-GeneID:
28871198
NCBI-ProteinID:
XP_018153932
UniProt:
A0A1B7Y086
LinkDB
All DBs
Position
8:3823824..3829140
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AA seq
1496 aa
AA seq
DB search
MTGASDSDRDPPTAAQKGKGPEAAENGGTSVNPPGETAAKTAGKGTGDGDAASRDDEEEE
EEESDEDDDDDDDEEDEDDDEDDEDEEPRLKYARLTQHLGPIYRNGDATSSFLVAGDKMI
IGTHNGNIHVIQLPMFQSLRVYHAHSASITSISISPNPPPLPTARSEAVQRLAAEAAENV
AKQRPASRQSGSSPAAASRRPKEPSPVPNTPSNNVHIATSSMDGNVCVFSLVDTKDVQLR
NFARPVQAVALSPDYKNDRTYLSGGLAGQLILTSGGQAGRSTSTTVGTAAATASGWLGSM
GLGTNTGKDTILHSGEGTINTIKWSLSGKYVVWLNEHGVKIMRSKLHLESADADDAWKRI
GHVDRPQTDEWETMASVWKGRAEWIDEQAVETEDGEPGRADVATTPASESSKQQSVSSTK
KIERLLVGWGGTIWIIHVHPGSVGTGKRAGEKSIGRAEIAKHLRMDCIISGISLYTQNLL
LVLAYVLPDDDDDDDSKDGDDDKVTRGHKSKISSTTSGSEPSGGIKRRQNNLPPELRLID
LTSQAEIDKDGLSVSRYERLSSGDYHLGVLPAQNAASAVASSKGALEAITGFGSDMWNAA
INPRTLFSSGASIRSGNSGDGVSSSQVPSSASGGRRSGTPTVHPNLAKPGVKIFIHSPFD
FILATKRDLGDHLGWLLEHQEYQKAWELLDEHPEIMAAPPENLHELVPTTPDRNQSSPDD
VLDDPYDTSSVMGSTGLARHPNSSAQKEKRRIGELWIRELIEAGNWAEAGKVCGTVLGSS
ERWEKWVWTFAGADKFDEITDYIPSEPMYPPIPGTIYEVVLNHYIQVDKLRFRELLDRWS
TDLFDIKTVTTALENQLKYRNVREDSVEGGEKGRDWKIVMESLARLHEANGRFRESLKCY
IKLQDADSAFRLIRDNHLAEAVTDDIPGFIGLRVPNNKREFLREADLEAATSEAITLLVD
EAQHGLVKPSAVVSQLQEQDLMLYLFFYLRALYKGEGLEEHSGENRDRLLMDSQSQVDEF
ADLAVELFAKWEQPLLMSFLKSSTSYKFEKAVQECEKYKYYDELVHLYSKTGEMKRALYL
IIDRLQDVKKAIEFAKQQDDPDLWDDLLDYSMDKPSFIQGLLEEVGTAINPIKLVRRIPE
GLEIQGLREGLKHIMKEHEIQYSISLGVARVLRSEVASAQNDLRSGQRKGIKFELVVQST
DHVDVQVRDVVHPPISAEKVEESFFKAPKAEQPGHSHEPSKPGHCAQCHEPFTEYEMETL
VGFTCGHVFHLSHLLEMLYPGKRQEADYGINSEESIRSGYRVGSKVTHARLLKDRIREGC
PMGPESRPVAAPPPPARDPRTDLPPPPRRAPHPRAPRPAHLDLPLRRAAARREPLGPRPT
PRAQPGADAAGARVPPAVPRDGAAAVPRVRVELADARADGAVPADGAADGSCAAEGYEGG
LRAWGQGVREPEPAGEGRAGRVGGRLVLGGERERTARGGGGWVGGLGLRGRREEKG
NT seq
4491 nt
NT seq
+upstream
nt +downstream
nt
atgacgggcgcatccgactccgatcgcgatcctcccaccgctgcgcaaaagggaaaggga
cctgaggctgccgagaatggcggcacttccgtcaacccccctggggaaacagctgcgaag
acggctggcaaggggaccggggacggtgacgccgccagtcgtgacgatgaggaggaagag
gaggaggaaagcgatgaggacgacgacgacgacgacgatgaggaagatgaagatgacgac
gaggacgatgaggacgaggagcctagactcaagtatgcccgtctcacacaacacctgggc
cccatctaccgcaatggtgatgctacgagctcgttccttgttgctggtgataagatgatc
atagggacacacaacggcaacatccacgtgatccaactacccatgttccagtccctccga
gtttaccacgcccactctgcctccatcaccagtatctccatctcccctaatccgcccccc
ctgccgacggcgaggtccgaagccgttcaaaggttggcagccgaagctgcagagaatgta
gcaaagcagcgtccagcttcccgccagtctggcagctcgccagccgctgcatcgagacgg
cccaaggagccttcgccagtcccaaacaccccttcgaacaacgtccacatagccacctcg
tcaatggatggcaacgtttgcgtcttctccctcgtagacacgaaagatgttcaattgcgc
aacttcgcccgcccagtacaagccgtagccctgtcccctgactacaagaacgatcgaacc
tatctttctggtggacttgccggccaactcatcctcacttccggcgggcaagccggtcga
agtacctcaacaactgtcggcaccgcggccgccacggcgtctggatggctgggcagtatg
ggcctaggaacgaacacaggcaaggataccattttgcattccggcgaaggcaccatcaac
actatcaaatggtccttgtctggtaaatacgtggtctggctcaacgagcacggcgtaaag
attatgcgctccaagctgcacctagagagtgccgacgctgatgatgcctggaagcgaatc
gggcacgtggatcgccctcaaacagacgagtgggagaccatggccagcgtctggaaaggc
cgcgccgaatggattgacgagcaggcagttgagaccgaagatggtgagcccggaagggca
gacgtagctacaacaccagcatccgagagctcgaagcaacaatcagtatcgagtacgaaa
aagatcgaaaggctccttgtcggctggggcgggacgatatggatcattcacgtccatcct
ggcagtgttggcactgggaagcgagccggcgagaagtcgattggccgcgccgagatagcg
aagcaccttcgcatggattgcatcatttctggaatttcgttatatacccaaaaccttctc
cttgtattagcatatgtattgccggacgatgacgacgatgacgacagcaaggacggtgac
gacgacaaagttaccaggggccacaagtccaagatctcgtcgactacaagcgggagcgag
ccatcaggcggcataaagaggcgtcagaataatcttccccctgaacttcggctgatcgac
ctcacatcgcaagccgagatcgacaaggacggcctcagcgtgagcagatatgagaggctc
tcgtcgggcgattaccatctcggggtgctaccagcgcaaaacgcggcttccgctgtggcc
tcgtccaagggagctttggaagccatcaccggctttggctccgacatgtggaatgcggcc
atcaacccaaggacactgttcagttcgggcgcaagtatcaggagcgggaacagcggggat
ggtgtctcgagctcgcaggttccgagttccgcaagtggcggccgaaggtctgggacaccg
actgtccaccccaacctcgccaagcccggagtcaagatcttcatacacagcccctttgac
tttatactcgcaacaaaacgagaccttggtgatcatctgggctggctgttggagcaccag
gagtaccaaaaggcctgggagttgctggatgagcatcccgagattatggccgctccccca
gagaaccttcatgagctcgtcccgacaacgccggataggaatcagagtagtccagacgat
gttctggacgatccctacgatacctcgtcagtcatgggttccactggactggcgaggcat
ccaaactcgtcagcgcaaaaggagaagaggcgcattggcgagctgtggatacgagagcta
atcgaagccggcaactgggctgaggccggtaaggtctgcggcacagtgcttggatcctcg
gagagatgggagaaatgggtctggacgtttgcaggtgccgacaagtttgacgagatcaca
gactacattccctccgagccaatgtatccgcctatccccggtaccatctacgaagtcgtt
ctgaaccactacatacaagtggacaagctccgcttcagagaattgctggaccgctggtca
accgatctctttgacatcaaaacagtcaccactgcgctggagaaccagcttaaataccgc
aacgtccgcgaggacagcgttgagggcggcgaaaagggccgcgactggaagattgtcatg
gagtcgctggcgcggctacacgaggcgaacggccgttttcgagagtcgctcaaatgctac
atcaagctccaagacgcagactcggcgttcaggctgattcgcgacaaccacctggctgag
gcggtcacggacgacattcctgggttcattggattgcgagttcccaacaacaagcgcgag
ttcctccgggaggccgatctcgaagcggctacgtcagaagccatcacgctgctggtcgac
gaggcgcagcacggtctcgtcaagccgtcggcggttgtgtcgcagcttcaagaacaagat
ctgatgctgtacctgttcttttacctccgtgctctgtacaagggtgagggtcttgaggag
cactctggcgagaaccgagacaggctattgatggacagccagtcgcaggtcgacgaattc
gccgatcttgctgtcgaactgtttgccaagtgggagcagccgctcttgatgagctttctg
aagtcgtcaacttcgtacaagttcgagaaggccgtgcaagagtgcgaaaagtacaagtat
tacgacgaactggttcatctatactccaagacgggagagatgaagcgcgctctctatctc
atcatcgaccggctgcaagacgtgaagaaagcgattgagttcgcaaagcaacaggacgac
cccgatctctgggacgacttgctcgactatagcatggacaagccaagcttcattcaggga
ctcctcgaggaggtcgggacggccatcaatccaatcaagctcgtccgccgcatcccggaa
ggactggagatacaagggttgagggagggattgaagcacataatgaaggaacacgagatc
cagtacagcatcagcttaggcgtcgcgcgcgtgcttcgaagcgaagtggcctcagcgcag
aacgacctccgcagcgggcaacgcaagggtatcaagttcgagttggtcgtccaatctacg
gaccatgtggacgtgcaggttcgggacgtggtgcacccgcccatcagtgcagagaaagtg
gaggagagctttttcaaggcgcccaaggccgagcagccgggccacagccacgagccatcg
aagccaggccactgtgcgcagtgtcacgagcccttcaccgagtacgagatggagacgctg
gtcggttttacttgcgggcacgtcttccatctgtcccacctgctggagatgctgtacccc
ggcaagagacaggaagccgactacgggatcaatagcgaggaatccattcgtagcgggtat
cgggtcgggtccaaggtcacccacgcgcgcctgctgaaggatcggatacgggaggggtgc
cctatgggacctgaatcgcgcccggtcgccgctcctccgcctcccgcccgagatccgcga
acagatctaccgcctcctcctcgccgcgcgccgcatccacgtgcgccacgacccgcgcac
ctcgaccttccactgcgtcgcgctgcggcccgccgcgaacccctgggaccacggcccacg
ccacgtgctcagccgggggctgacgctgctggtgcgcgtgtgccgccagctgtaccacga
gacggagctgctgccgtaccgcgagtgcgcgtggagctggcagacgcccgggctgatgga
gcggtacctgctgacggagcggcggatgggtcttgcgcagcggagggctatgagggaggt
ctgcgtgcgtggggtcagggggttcgggaacctgagccggcgggtgaggggcgtgctggg
cgggttggaggtcgtctggttctgggaggggaaagggagaggacggcgcggggaggcgga
ggatgggttggggggttgggtttgcgaggtcgtcgagaggagaagggttga
DBGET
integrated database retrieval system
