Colletotrichum higginsianum: CH63R_12123
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Entry
CH63R_12123 CDS
T08176
Name
(RefSeq) ATP-dependent RNA helicase DHH1
KO
K12614
ATP-dependent RNA helicase DDX6/DHH1 [EC:
5.6.2.7
]
Organism
chig
Colletotrichum higginsianum
Pathway
chig03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
chig00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CH63R_12123
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
chig03019
]
CH63R_12123
03036 Chromosome and associated proteins [BR:
chig03036
]
CH63R_12123
Enzymes [BR:
chig01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
CH63R_12123
Messenger RNA biogenesis [BR:
chig03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
CH63R_12123
mRNA degradation factors
5'-3' decay
Decapping complex
CH63R_12123
Chromosome and associated proteins [BR:
chig03036
]
Eukaryotic type
Gene silencing
piRNA pathway
CH63R_12123
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
NA-iREase2
CMS1
Motif
Other DBs
NCBI-GeneID:
28871204
NCBI-ProteinID:
XP_018153938
UniProt:
H1V002
LinkDB
All DBs
Position
8:3845619..3847429
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AA seq
531 aa
AA seq
DB search
MAEALADKLKATNLSDGAASEDWKKSLKLPAKDNRQQTEDVTNTKGLEFENFQLKRDLLM
GIFEAGFERPSPIQEEAIPVALTGRDILARAKNGTGKTAAFVIPALEKINPKVSKIQALI
LVPTRELAMQTSQVCKTLGKHLGINVMVTTGGTGLRDDIIRLQDPVHIVVGTPGRILDLA
GKNVADLSECPMFIMDEADKLLSIEFTPVIEQLLQFHPKDRQVMLFSATFPLSVKDFSDK
NMVSPYEINLMDELTLRGITQYYAFVEEKQKVHCLNTLFSKLQINQSIIFCNSTNRVELL
AKKITELGYSCFYSHAKMAQQARNRVFHDFRNGVCRNLVCSDLLTRGIDIQAVNVVINFD
FPKNAETYLHRIGRSGRYGHLGLAINLINWDDRFNLYNIEKDLGTEIQPIPASIDKSLYV
YENPESIPRPISNFKSGQPGQGQQQPQIQQSQQQHQQHQPLLQGGPAPGNWQTQQPQQSG
QQNGYQGGGRGRGRGRGGYRGQNRGGYGGGGGRGRSQGQGQGHPQPQGQLS
NT seq
1596 nt
NT seq
+upstream
nt +downstream
nt
atggcggaagcactcgcagacaagctcaaggcgacgaacttgagcgatggcgccgcatca
gaggactggaagaagagcctgaagctgcctgccaaggacaacagacaacaaactgaggat
gtcacaaacaccaagggtctggagttcgagaacttccagctcaagagagatttgttgatg
ggcatcttcgaggccggattcgagaggccctcccccatccaggaagaagccatccccgtc
gccctgaccggccgcgacatccttgcccgtgcgaagaacggtactggaaagacggccgcc
ttcgtcatccccgccctcgaaaagatcaatcccaaggtctccaagatccaagccctcatc
ctcgtcccaactcgcgagctcgccatgcaaacatcacaggtctgcaaaaccctcggcaag
cacctcggaatcaacgtcatggtcactaccggaggcactggtcttcgcgacgatattatc
cgcctgcaggaccccgtccacatcgttgtcggtacccccggcagaatccttgacctggcc
ggcaagaacgttgccgacctgagcgaatgccccatgttcatcatggacgaggccgacaag
cttctctccatcgagttcacccccgtcatcgagcagctgctgcaattccaccccaaggac
cgccaggtgatgctcttctccgccaccttccccctctctgtcaaggacttctccgacaag
aacatggtcagcccctacgagatcaaccttatggacgaactcaccctccgcggcatcacc
cagtactacgcttttgtcgaggagaagcaaaaggtccactgcctcaacaccctcttctcc
aagctgcagatcaaccagtccatcatcttctgcaactcgaccaaccgtgtcgagctgctc
gccaagaagatcaccgagctgggctactcgtgcttctacagccacgccaagatggcccag
caggcgagaaatcgcgtcttccacgacttccgcaacggcgtgtgccgaaacctcgtctgc
tctgacctgcttacccgtggtatcgacatccaggccgtcaacgtcgttatcaactttgac
tttcccaagaacgccgagacctacctgcatcgtattggcagatccggtcgttacggtcac
ttgggtttggccatcaacttgatcaactgggatgacaggttcaacctgtacaacatcgag
aaggacctcggcaccgagatccagcccatccccgccagcatcgacaagtccctttacgtc
tacgagaaccccgagtctatcccgagacccatctccaacttcaagtccggtcagcccggt
cagggtcagcagcagccccagatccagcaaagccagcagcagcaccagcagcaccagccc
cttctccagggtggcccggctcctggtaactggcagactcaacagccccagcagagcggt
caacagaacggctaccagggcggcggcagaggtcgtggacgcggccgtggcggttaccgg
ggccagaaccgcggcggatacggcggtggcggtggccgcggtcgtagccaaggccaaggc
cagggtcacccccagccccaaggacagctgtcctag
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