KEGG   Colletotrichum higginsianum: CH63R_13643
Entry
CH63R_13643       CDS       T08176                                 
Name
(RefSeq) CPSF A subunit region
  KO
K10610  DNA damage-binding protein 1
Organism
chig  Colletotrichum higginsianum
Pathway
chig03420  Nucleotide excision repair
chig04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:chig00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    CH63R_13643
  09124 Replication and repair
   03420 Nucleotide excision repair
    CH63R_13643
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:chig04121]
    CH63R_13643
   03400 DNA repair and recombination proteins [BR:chig03400]
    CH63R_13643
Ubiquitin system [BR:chig04121]
 Ubiquitin ligases (E3)
  Multi subunit type E3
   Cul4 complex
    Adoptor protein
     CH63R_13643
DNA repair and recombination proteins [BR:chig03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   NER (nucleotide excision repair)
    GGR (global genome repair) factors
     Cul4-DDB2 complex
      CH63R_13643
    TCR (transcription coupled repair) factors
     Cul4-CSA complex
      CH63R_13643
SSDB
Motif
Pfam: Beta-prop_RSE1_2nd Beta-prop_RSE1_1st CPSF_A
Other DBs
NCBI-GeneID: 28872724
NCBI-ProteinID: XP_018150935
UniProt: A0A1B7XRN4
LinkDB
Position
10:623759..627428
AA seq 1163 aa
MSYVAPIHRPSSIRQALSIRLSEDDDTESLLVARSNRLEVWRVTPTDMYMLGSAAVYGTI
LFLQRLRPKDTKADLLFVGTDRFQYFTARWDPATQRLQTEQVIEDAAEPHMRDAQSQDRC
LVDPTGKFMAMHLWEGVLNVMRLGTRKGTFTRLDDSWERVRLSELFVKASTFVPTETGHP
TVAYLYQSQIEKEDAHLAIYRLMSDDKNTTVSRFDPSRDREFELEIKDPYARIVIPVPIV
EDEVKRYHKRDTTGAKAQLGGLIVVGETLLVYVDTLTRTVVESGLNSPAIFVAWAAYDDT
NYFLSDDYGNLHLLTIETEGVVVTNLSLRLLGVTSRASCLVHMGNGLLFLGSHYGDSQLL
QINMESLKTRLVQTIPSIAPILDFSIMDLGNAGDSQVGNAFSSGQARIVAGCGVHQNGSL
RSIRSSVGLEDIGVLEDLQDVRGLFSLRSHGSPKVDTLVVSFITETRIFSFDPEGGIEEV
FEFQGLALDRPTLVATTLPDGRLLQVTSTTVTLLESERGITLNTWAVPDGKAIVNASANN
KWVLLSINGTTLVSLNLLNNLSAQEQVLGRDIGGHEDQISCIHAASDLDDVGVVGFWATG
SVSIIDLRTLDALHGETIKQTDDSVSVPRDLALVQLHPPHLLGPTLFVAMEDGQVVSFNV
SKQDFSLSSRKSVTLGSQQAGLHVLPRPGGEGISNIFATTEHSSLIYSSEGRIIYSAATA
EDVTYIAPFDSEAFPDAIFLATDQNIRIAHIDAERRTHVNPLPLRETVRRVAYSPALRAF
GIGTISRELVNNEEVVTSSFRLVDEIVLGVVGKPFHLDGSTSTEMVESVIRAELPDSMGQ
PAERFIIGTSYLADPEMDENSDVRGRILVLGVDSDKNPYLIVSHELKGACRSLGIMGEKL
VAGLSKTVVVYEYAEESSTSGALRKLATFRPSTFPVDIDVNGNMIGIADLMQSMTLVEFI
PAQDGNKAKLVERARHFQYIWATSVCHLEGHSWLEADAQGNLMVLRRNPDAPTEHDQKQM
EVTSEFHLGEQVNKIRPLDITPNENDPIVPKAFLATVEGSLYVFADIKSEYQSLLLQFQE
RLADVVKTLGQAGGDSTSGLSFMAWRGFRNAKRAADGPFRFVDGELIERFLDLDEAKQEA
VVQGLGPTVENMRNLVEELKRMH
NT seq 3492 nt   +upstreamnt  +downstreamnt
atgtcgtacgtcgcgcccatccacaggccaagcagcatacggcaggccttgagcatacgc
ctgtcggaggacgacgacaccgagagcttgctggtagcaagatccaacagactcgaagta
tggcgcgtcacgcccaccgacatgtacatgctcggctcggccgcagtctacggcaccatc
cttttcctccagcgcctgcggcccaaggacaccaaggccgacctgctgtttgtcggtacc
gatcgattccaatacttcacggcgagatgggatcccgcaacccagagactgcaaaccgag
caggtcatcgaggatgccgccgaacctcacatgcgcgacgcccagagtcaggataggtgc
ctggtagacccaacaggcaagttcatggccatgcatctatgggagggcgtcttgaacgtc
atgcgcctgggaacgcgcaagggaacatttactcgcctcgacgactcatgggagcgggtt
cgcctgtcagagcttttcgtcaaggccagcacgttcgtgcccaccgagaccggccaccca
acggttgcctacttataccagtcccagatcgagaaggaagatgcacacctcgccatatac
aggctcatgagcgatgacaagaacacaaccgtgtcaaggttcgaccccagcagggatcgg
gagttcgagctggagataaaggacccatatgcgcgcatcgtcatacccgtgcccatcgtg
gaggacgaggtcaagcgttaccacaagagagacaccacaggggcgaaagcccagctgggt
ggcttgattgttgtcggagagacgttgttggtctacgtcgacactctgacacgtaccgtc
gtcgagagcgggctcaacagccctgccatcttcgtcgcgtgggccgcctacgacgacacg
aattacttcctctctgacgactatggaaaccttcatctcctgacgattgaaaccgagggt
gtcgtcgtcacaaacctctccctgagactattaggcgtgacctctcgcgcatcttgcttg
gtgcatatgggaaatggcttgcttttcctaggctctcattacggcgattcccagcttctc
cagatcaacatggagagtctgaaaacgaggctcgtccaaaccattcccagcattgcccct
atcctcgacttttccataatggacctgggaaacgccggggatagccaggtcggcaatgct
ttctcctcgggccaggcccgcatcgtcgccggctgcggcgttcatcaaaacggcagtcta
cggagcattcgaagcagtgtaggtctcgaagatattggcgttcttgaggacttgcaggac
gtccgcgggctgttcagtctccgatcgcatggttcacccaaggttgacactcttgttgtt
tccttcatcaccgagacccgaatcttcagctttgatccagaagggggcatcgaggaggtg
tttgaatttcaagggcttgccttggacaggccaacgctggttgcgacaacccttcccgac
ggccgcctgttgcaggtcacatccaccaccgtgacgcttcttgaatccgagaggggcatc
actttgaatacgtgggcagtaccggatggtaaggctatcgtcaatgcgtcggccaataat
aagtgggtgctgttgtctatcaacggcacgaccctggtgtctctgaacctgttgaacaat
ctgtcggctcaagagcaagtcttgggtcgcgacattggaggtcatgaggatcagatctcc
tgcatccacgctgctagtgatctcgacgacgttggcgtagtcggtttttgggcgactggt
tcggtatccatcatcgacctccgcacactcgatgccctccacggggagaccatcaagcaa
accgacgacagcgtgtctgttccaagggacctggccctagtacaacttcacccgccacac
cttctgggccctacactctttgtagccatggaagatggacaggtggtgtcgttcaacgtt
tcaaagcaggacttctccttgtctagccgaaagagcgtcacactgggtagccaacaggcc
ggtctccacgttcttcccaggccaggcggcgagggcatcagcaatatcttcgccaccacc
gagcactccagcctcatctacagctcagagggacgcatcatctattcggcagccaccgcc
gaagacgttacgtacatcgcgccttttgactcggaagcttttcccgacgccatcttcctt
gccacagaccaaaacatccggattgcccacatcgacgccgaaaggagaacccatgtcaat
ccattgccgctgcgcgagacggttcgcagggtggcgtactcgccggcgttgcgggctttc
ggcatcggaaccattagccgggaactcgtcaataatgaagaagtagtcaccagctcgttc
cggcttgtcgacgagatcgtacttggagttgttggaaaaccgttccacctcgacggttcg
acgtcaacagagatggttgagagcgtcatcagagcagaactgccggacagcatgggccag
cccgccgagagattcatcattggtacgagctacttggccgatccggaaatggatgagaac
agcgacgttagaggacgcattctcgtcctcggcgtggattccgataagaacccttacctg
attgtgagccacgagctgaaaggcgcctgccggagccttggtatcatgggcgagaagctt
gtcgccggcctgagcaagacggtggtggtatatgagtatgctgaggagtcgagcacttca
ggcgcactgcgcaagctggccacattccggccttcgacgtttccagttgacattgacgtc
aacggaaacatgattggcatcgctgatttgatgcaatcaatgactttggttgagtttatc
ccagcccaagatggaaacaaggccaagcttgtggagcgggcccgtcacttccagtacatc
tgggccacctcggtgtgccacctagaagggcactcgtggctggaagcggatgcgcagggc
aacctgatggtgctgcggaggaatcccgacgcgccgacagagcatgaccagaagcagatg
gaggtaacgagcgagttccaccttggtgaacaagtcaacaaaatccggccactcgacatc
acgcccaacgagaacgaccccatcgtacctaaggcgttcctcgcgacggttgaggggtcg
ctttatgtatttgcggacatcaagtcggaataccaaagtctcttgcttcaattccaggag
agactggcggatgtggtcaaaaccctgggacaggcaggcggcgactctacttcgggcctg
tccttcatggcgtggcgaggcttcagaaatgccaaacgggccgcggacgggcctttccgg
ttcgtcgacggcgagttgattgagcgcttcttggacttggacgaggcaaaacaagaggcc
gtcgttcagggtcttggtccaacagtcgaaaacatgcggaacctggtcgaggagctgaag
cgcatgcattaa

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