Colletotrichum higginsianum: CH63R_13754
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Entry
CH63R_13754 CDS
T08176
Name
(RefSeq) Helicase associated domain-containing protein
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
chig
Colletotrichum higginsianum
Pathway
chig03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
chig00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
CH63R_13754
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
chig03041
]
CH63R_13754
Enzymes [BR:
chig01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
CH63R_13754
Spliceosome [BR:
chig03041
]
Complex C
Other components
Step II factors
CH63R_13754
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
S1
Helicase_C
AAA_22
HA2_N
DEAD
AAA_19
AAA_30
T2SSE
nSTAND3
AAA_16
ABC_tran
PhoH
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
28872835
NCBI-ProteinID:
XP_018151046
UniProt:
A0A1B7XRW5
LinkDB
All DBs
Position
10:963222..966938
Genome browser
AA seq
1238 aa
AA seq
DB search
MSSCRRTACGDLELFEASATIAIRGPESRPGHLTVPTTMDDLLNLELLSLVSKVTSELQN
HLGVSDKTLAEFIIAQRVDAEDYDAFKKKLAAMGADFPPSLVESVDRLVLTMHPKMKGKA
QKNGAGAGGSSEDQHHRSTAEKEQIFRGLSVPDKPVAYDNIGDGVDAIDDTLALLEGLEG
KARKEKPDSRKRSRSPDDGREARRKHRGRSRSRERRKRDKYRSRSRSFDDYENGPSLKQR
SKRRNYDNEDDDRFRRAPEPEVDDAPQLHKVYSGHVTGIKDFGAFVNLHGVRGKVDGLVH
ISRLVEGQRVNHPSDLLTKGQEVKVKVVNIEGNRVGLSMKEVDQETGLDLHPEVRISSGA
NLEALGGGGSRNNNMFDDTPMPPPQHQPRRQKKRMTSPERWEIRQLIASGVAKASDYPDL
EEDYNATLRGDGELELEQEVDIEVREEEPPFLAGQTKQSLELSPIRVVKAPDGSMNRAAM
SGTALAKERKELKQQEAEAAAAEDSKVDLSAQWNDPMADPDKRKFASDLRNAKSQMGQNK
PDAVPEWKRAVAPKDQAFGKRTNMSIKDQRESLPVYAFRRKFLDAVREHQVMVVIGETGS
GKTTQLTQYLAEDGFANHGVIGCTQPRRVAAMSVAKRVAEEVGTPLGEAVGYTIRFEDKT
SPATKIKYMTDGMLQREILVDPDLRRYSVIMLDEAHERTISTDVLFALLKKTMKRRKDLK
VIATSATLDADKFSSYFDGCPIFTIPGRTFPVEILYSREPESDYLDAALVTVMQIHLTEP
PGDILLFLTGQEEIDTSCEILYERMKALGPNVPELIILPVYSALPNEMQSRIFDPAPPGC
RKVVIATNIAETSITIDNIYFVVDPGFVKQNAYDPKLGMDSLVVTPISQAQANQRAGRAG
RTGPGKCFRLYTEAAYQSEMLPTTIPEIQRQNLSHVILMLKAMGINDLLHFDFMDPPPIN
TMLTALEELYALSALDDEGLLTRLGRKMADFPMEPSLAKVLIISVDMKCSAEMLIIVAML
NLPNVFYRPKEKQSQADQKKAKFHDPHGDHLTLLNVYNSWKQSSYSSPWCFENFIQARSM
KRAKDVHDQLVKIMERYRHPILSCGRNTQIVRQALCSGFFRNAARKDPQEGYKTLIEGTP
VYLHPSSALFGKQAEWVIYHTLVLTTKEYMHCTTSIEPKWLVDAAPTFFKVAPTDRLSKR
KKAERIQPLHNKYAGEDDWRLSAQRKGGRGGGGGGTWG
NT seq
3717 nt
NT seq
+upstream
nt +downstream
nt
atgtctagttgtcgtcgcacggcatgcggcgacctagaactttttgaggcctcagcgacc
atcgcaatccgaggtcctgaatcacgacccggacacctcactgtacccacgaccatggac
gacctcctgaacctcgagcttctgtcgctcgtatcaaaggttacgtctgagctgcagaac
catttgggcgtctccgacaagaccctcgccgagtttatcatcgcccagcgcgtcgacgcc
gaggactacgatgccttcaagaagaaactcgccgccatgggcgccgacttcccgccgagt
ttggtcgagagcgtcgatcgtctcgtattgaccatgcacccgaagatgaagggcaaggcg
cagaagaacggcgccggcgccggcggcagcagcgaggaccaacaccaccgaagcaccgcc
gagaaggagcagatcttcagaggtctgtctgtgccggataagccggtggcatacgacaac
atcggagacggcgtggatgccatcgacgacaccctggccttgttggaaggattggagggc
aaggcgcggaaagaaaaaccagactcgcgcaagcgcagtcgcagtccagacgatggtcgc
gaagcgcggcggaaacacagaggtcggtccaggtcaagggaaagaaggaaacgagacaaa
taccggtcgcggtctcgatcgttcgacgattacgaaaacgggccttctttgaagcagaga
agcaaacgacgcaactacgacaacgaggacgacgaccggttcaggagggcacctgaaccc
gaggtcgacgacgccccgcagctgcacaaggtttatagcggacacgttactgggatcaaa
gatttcggagcgtttgtcaacctacacggtgttcgcggcaaggtcgacggcttggttcac
atctcgaggctggtggaaggccaacgggtcaaccatccctctgacctgctgaccaaaggc
caggaggtcaaggtcaaggttgtcaacattgaaggaaacagggtaggcctttccatgaaa
gaggtcgaccaagagaccggactggatctccacccagaagtcaggatatcgtcgggagcg
aacctggaagcgctgggtggcggcggcagtcgaaacaacaacatgtttgacgacacgccg
atgccgccgccgcaacaccagcctcgtcgacaaaagaagcgcatgacatcgccggagaga
tgggagatacgacagttgatcgcatctggtgttgcaaaggcatccgactaccccgacctg
gaagaagactataatgcaaccctcagaggcgacggcgagctggagctggaacaggaggtc
gacatcgaggtccgagaggaggagccgccgttcttggcgggtcagacgaagcagtcactc
gagctgtcacccatccgcgttgtcaaagcgccagacggctcaatgaaccgagctgccatg
tcgggcactgcgctcgcaaaggagagaaaggagctcaagcagcaagaggcggaagcagcg
gcggccgaagactccaaggtcgacctctctgcgcagtggaacgacccgatggcggaccct
gacaagcgcaagttcgccagcgatctacggaatgccaagtcgcagatgggacagaacaag
cccgacgccgtgccggaatggaagcgagcggtggcgccaaaggaccaagcattcggcaag
cggaccaacatgagcatcaaggaccagagagaatccttgcccgtttatgcgttccgacgc
aagttcttggatgccgtcagggagcaccaggtcatggtcgtcattggagaaaccggctcg
ggcaagacgacgcaactgacgcagtatctcgccgaagacggcttcgccaaccacggagtc
attggctgcacacaaccccgacgcgtggccgccatgtccgtcgcgaagcgtgtggccgag
gaagttggcacccccctcggcgaggccgtcggatacacgattcgttttgaggacaagacc
agcccggcgaccaagatcaagtatatgacggacggtatgctgcagcgtgagatcctggtg
gacccggacctgaggcggtactcggtcatcatgcttgacgaggcccacgaacgcacaatt
tctacggatgtcttgttcgcgctgctgaagaagacgatgaagcgccggaaggacttgaag
gtcatcgccacatcagcaacgctggatgccgacaagttctcgtcgtactttgacggatgc
cccatctttaccattcccggccgaacgttccctgtcgagatcctctactcccgcgaaccg
gagtccgactatctcgatgccgcactggtcactgtcatgcagattcacctcaccgagcct
cctggtgacattctgctattcttgacaggccaggaagaaattgacacgtcttgcgagatc
ctgtatgagcggatgaaagctttggggccaaacgtcccagagcttatcattctaccggtg
tactcggcacttcctaacgagatgcagagccgcatcttcgaccctgcacctcctggctgc
cgaaaggtagtcattgccaccaacatcgccgagacctccatcaccatcgacaacatctat
ttcgtcgtcgaccctggtttcgtcaagcagaacgcctacgacccgaagctcggcatggac
tcgcttgtcgtgaccccgatttcacaggcgcaggccaaccaacgtgctggtcgtgcggga
cgtacggggcctggaaaatgcttccgtctctataccgaggctgcctaccagtcggaaatg
ctgccgacgacgatccctgaaatccagcgccagaacctgtcccacgtcattctcatgctc
aaagcgatgggcatcaacgacctgctgcacttcgacttcatggaccctccgcccatcaac
acgatgctcacggcgttggaggagctctacgcccttagcgcgcttgacgacgagggcctt
ctcacgcgtctagggaggaagatggcggacttccctatggagccgtcactggccaaggtg
cttatcatctcggtagacatgaagtgctcggccgagatgctcatcatcgtggcgatgctg
aatctgcccaacgtgttttaccggcccaaggagaagcagtcacaggcggaccagaagaag
gccaagttccacgacccgcacggcgaccacctgacgctcctcaacgtgtacaattcgtgg
aagcagagcagctactcgagcccgtggtgtttcgaaaacttcatccaggcgcggtcgatg
aagcgggccaaggacgtacacgaccaactcgtcaagatcatggagcggtaccggcacccg
atcctcagctgcgggcgcaacacgcaaatcgtgcggcaggcgctctgttcgggcttcttc
cgcaacgcggcgcgcaaggacccgcaggagggctacaagacactcatcgagggcacgccg
gtgtacctacacccgagctcggcgctgttcggcaagcaggccgagtgggtaatttaccac
acgctcgtgctgacgaccaaggaatacatgcactgcacgacaagcattgagcccaagtgg
ctcgtggacgcggcgccgaccttcttcaaggtggcgccgacggaccggctgtcgaagagg
aagaaggccgaaaggatccagccgctgcacaacaagtacgcgggcgaggatgactggagg
ctcagcgcgcagaggaagggcgggcgcggcggcggcggcggcggtacgtggggttag
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