Colletotrichum higginsianum: CH63R_14182
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Entry
CH63R_14182 CDS
T08176
Name
(RefSeq) Transcription elongation factor SPT5
KO
K15172
transcription elongation factor SPT5
Organism
chig
Colletotrichum higginsianum
Pathway
chig03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
chig00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
CH63R_14182
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
chig03021
]
CH63R_14182
03019 Messenger RNA biogenesis [BR:
chig03019
]
CH63R_14182
Transcription machinery [BR:
chig03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription elongation factors
CH63R_14182
RNA polymerase I system
CH63R_14182
Messenger RNA biogenesis [BR:
chig03019
]
Eukaryotic type
mRNA processing factors
3' end processing
DRB sensitivity inducing factor (DSIF) complex
CH63R_14182
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Spt5-NGN
Spt5_N
CTD
KOWx_SPT5
KOW5_SPT5
KOW4_SPT5
KOW2_Spt5
KOW1_SPT5
KOW
Cornifin
Motif
Other DBs
NCBI-GeneID:
28873263
NCBI-ProteinID:
XP_018151474
UniProt:
A0A1B7XT66
LinkDB
All DBs
Position
10:2406598..2409957
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AA seq
1052 aa
AA seq
DB search
MASSDHNRYDDSEEEDDFNPAPADLSDEEPDHDATNKHARDSSPVADDDHDAPAPSKSRI
PDDDDEDEEQDEDDAIQNDDEEDEEEEDDEDEDDVQQGHRRKRRKDRRAAFFDIEAEVDD
EEDGEDEEKDGEEIEDFIDNAHPDDIAESGGLDDDRRHRELDRRREMEASMDAEKQAEIL
RQRYGNRRPNKGFGDSAVVPKRLLMPSVDDPTIWAVRCKEGKEREVVFSIMKRVEERMGT
KDELAIISAFERGGPTSVMKGYIYVEANRSTDIMVALDGMFNVYPRSKMILVDIKDMPDL
LRVTKTPTLEPGAWVRLRKPAKHAGDLAQVIDVTENGLEARVRFIPRLDYGMRDDALASA
LTLDGKRKRPIGMAGPRPPQRLFNETEARKRHPRHIQGNPTTKVWNYMGDEFENGFQVKD
IKIQQLVVTDVNPTLEEVTRFASGAEDGTENLDLKALASSLKDSNINVTYLPGDIIEVYE
GEQKGVVGKATNVQGDIVTMQVTEGVLAGQVIEVPTKGLRKRFRVGDHVKVTSGSRFRDE
VGMVVKISEDRVTFLTDQTNTEVTVFSKDLREASDIGGQGSLGQYELFDLVQLDPTTVGC
IVKVDRESVVVLDQNGDTRQVMPSQIANKLPKRKIAVAADRNGSEIRLDDVVREYGGQQR
QGKIIHIHRAYVFLHNNDSNENAGVFVTKAGNVNTIAAKGGRVLSAGPNLDQMNPAMKRN
PNGSESKMAPPKSFGGRDRAIDKTVIIRKGGYKGLLGIVKDATDTHARVELHTKSKTITV
PKDHLSFKDKITGAKIEINGRGRGGHSGPPGGGRGGHGDWQGGRTPVASSSSERTPAWGS
RTPAPASGRTPAWKSSGPDYSGSRTPAWADGSRTAYGDGNRTAYGGGSRTPAWQSGAKTP
AHDAFGLGSKTPAYGGGDAWGSGSKTPAYGGSAPTPGASGSDSWGYTPGQSGYDAPTPGG
ALLGAPTPGALNAPTPGAYSAPTPAAASAPTPGGGWQGGWGADSAPTPAAGAPTPAASGF
TSSSAYYGAPTPAAYGAPETPAASGPRYTDDD
NT seq
3159 nt
NT seq
+upstream
nt +downstream
nt
atggcttccagcgatcacaatcgctacgatgactcggaggaagaggacgacttcaaccct
gcccccgccgatctgtccgacgaggaacccgaccacgacgccaccaacaagcacgcacgc
gacagcagtcccgttgccgacgacgaccacgatgcccctgcaccttcgaagtcgagaatt
ccagacgatgacgacgaagacgaggaacaggatgaagatgatgctatccaaaatgacgat
gaagaagacgaggaagaagaggatgatgaggacgaggacgatgtacaacagggacatcgc
cgcaagcgcagaaaggaccgccgcgctgccttcttcgatatcgaagccgaggtcgacgac
gaagaggatggcgaggatgaggagaaagacggtgaggagatagaggacttcatcgacaac
gcccatcccgacgatattgccgaaagcggaggtctcgatgatgacagacgtcacagagaa
ctcgaccgtcgccgcgagatggaggcgagcatggatgctgaaaagcaggccgagattctt
cgtcagcgttacggcaaccgccgcccgaacaagggatttggagattctgccgtcgttccc
aagcgtttgctcatgcccagtgtcgatgatcctactatttgggccgtcagatgcaaggaa
gggaaagagcgggaggtcgttttctccatcatgaagcgtgtcgaggagaggatgggcacg
aaggatgaactggccatcatctcggcattcgaacgcggtggtccaacttccgttatgaag
ggttacatctacgtcgaagccaaccgttccaccgatatcatggtggctcttgatggcatg
ttcaacgtctacccccgctccaagatgattctggtcgacattaaggatatgcccgacttg
ctccgtgtcacaaagacacccacccttgagcctggcgcctgggtcagacttcggaagcct
gccaagcacgccggcgatcttgcccaagtcatcgacgttaccgagaacggcctcgaggcc
agagtccgcttcatcccccgccttgactacggaatgagagacgacgctctcgcttccgcc
ctcaccctcgatggcaaacgaaaacgacccattggcatggccggaccgcggccccctcag
cgtcttttcaacgagactgaggctcgcaagcggcaccccaggcacatacaaggcaatccg
accaccaaggtatggaactacatgggtgacgagttcgagaatggcttccaggtcaaggat
atcaaaatccagcaactagtggttacagacgtcaacccgaccctggaagaagtcaccaga
tttgcctctggtgcagaggacggtaccgagaacctcgatctcaaggcccttgcttccagc
ctcaaagacagcaacatcaatgtcacttacttgcccggcgacatcattgaggtctatgaa
ggcgagcagaagggtgttgtcggaaaagccaccaacgtccagggtgacattgtcacgatg
caggtcacggagggagtactggcgggccaggtcatcgaagtccccaccaagggtctgagg
aagcggttcagagtcggagatcacgtcaaggtcaccagcggcagtcgattccgtgacgag
gtcggtatggttgtcaagatctcagaagacagggttaccttcttgacagaccagaccaac
acggaagtcacggtttttagcaaggacttgcgggaagcaagtgacattggcggacagggc
tcgctgggccagtatgagctctttgacctggttcagttggacccaaccacggtcggttgc
attgtcaaggttgaccgcgaatctgtggtcgtgctcgaccagaatggagatacgcggcaa
gttatgccgtcgcagattgccaacaagcttcccaagcggaaaatcgccgttgctgctgac
aggaacggctccgagatcaggctcgacgatgtggtccgagagtatggcggtcaacagcgt
cagggcaagatcattcacattcatcgcgcctacgtcttcttgcacaacaacgacagcaac
gaaaatgccggcgtcttcgtcaccaaagctggcaacgttaacaccattgccgccaagggt
ggacgcgtactttcagctggtcccaatctggatcagatgaaccctgccatgaagcgcaac
cctaacggctccgagagcaaaatggcgccgcccaaaagttttggaggacgagatcgtgcg
attgacaagaccgtcatcatcaggaagggtggttacaagggcctcctgggcatcgtcaag
gacgctacggatacccacgcccgtgtggagctacacaccaagagcaaaaccatcactgta
cccaaggatcacctcagctttaaggacaagatcacgggtgcgaagatcgaaattaatggc
cggggtcgtggtggccacagtggtcctcccgggggcggtcgtggtggacatggagattgg
cagggaggcagaacgccagtcgcctccagcagttccgagagaacgcccgcttggggttcg
agaacccccgcgccggctagcggccgtactccggcttggaagtcgagcggcccggattac
tccgggtcacgtacaccggcctgggccgatgggtcccgaactgcctacggcgatggaaac
cgtaccgcgtatggcggaggatcgcggacgccggcatggcagtctggtgccaagacaccg
gctcacgatgccttcgggttgggatcgaagacacctgcatacggaggaggggatgcctgg
ggctctggctccaaaacacccgcatatggtggctctgcaccgacgccgggtgccagcgga
agcgactcgtggggatacacgcccggacagtctggctacgatgctccgacgcccggcgga
gcccttcttggtgcgccaacgccaggcgcactcaatgcccccacgcctggtgcctactcg
gcgccaaccccggcggccgcgagcgccccaacccccggcggcggatggcaaggcgggtgg
ggtgccgactcggccccgactcctgctgcaggtgcgcctactcccgctgccagtggcttc
acctcgtcatctgcctattacggcgcgcctacacctgcagcatatggcgcgcccgagacg
ccggcagcaagtgggcccagatacaccgatgatgactag
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