KEGG   Chitinophaga agri: GWR21_00940
Entry
GWR21_00940       CDS       T06416                                 
Name
(GenBank) RNA polymerase sigma-70 factor
  KO
K23514  RNA polymerase sigma-19 factor, ECF subfamily
Organism
chih  Chitinophaga agri
Pathway
chih02020  Two-component system
Brite
KEGG Orthology (KO) [BR:chih00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    GWR21_00940
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:chih03021]
    GWR21_00940
Transcription machinery [BR:chih03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     GWR21_00940
SSDB
Motif
Pfam: Sigma70_r4_2 Sigma70_r4 Sigma70_ECF HTH_Tnp_4 HTH_24 Sigma70_r2 DUF1441 PCI HTH_23 HTH_11 HTH_40 HTH_10 DUF722 HTH_20 GerE HTH_38 HTH_30 HTH_DeoR Mga HTH_Tnp_ISL3 DUF2774 T4_Gp59_C PIF2 PF0610-like_N DUF6362
Other DBs
NCBI-ProteinID: QHS58209
UniProt: A0A6B9Z8L5
LinkDB
Position
246151..246768
AA seq 205 aa
MRQDYSTYTDEEVFLLVKKGDNDAFGEIFRRFWQELLDAAYRRVKVQETAMEMVQSLLVN
LYIKRDKIVLSSSLRNYLHISLKNKVLNAIRAEVVRNGYQQHALAERNVYQPDAATALQL
KELQEQIDASCAEMPEKCREVFYLSRKEHLSYQHIAQRLGISVNTVEKHMVKALKILRSR
LKEYNFTLFWLLVIVLLGWEIFSKF
NT seq 618 nt   +upstreamnt  +downstreamnt
atgcgacaagattattccacgtataccgatgaagaggtattccttcttgttaaaaagggg
gacaacgacgcattcggagagatattcaggcgcttctggcaggaactgctggatgcagca
tacaggcgcgtaaaagtacaggaaacagccatggaaatggtacagagcttactggtcaac
ctgtatatcaaaagagataagatagtactcagctcatctctccgtaattatctgcatata
tcactgaaaaataaagtactgaacgcaatacgggctgaagtggtccgcaacggctaccag
cagcatgcattggcggagcgtaatgtttaccagcctgatgccgcgactgccctgcaactt
aaagaactgcaggaacaaatcgatgcgtcctgtgcggaaatgccggagaaatgccgggag
gtgttctacctgagcaggaaggaacacctgtcttatcagcatattgcacaacgccttggg
atctcagtcaataccgtggagaaacacatggtaaaagccctgaaaatattgcgttcacgc
ctgaaagaatacaacttcaccctgttctggttgttagttatcgtgctgcttggatgggaa
atcttttctaaattttga

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