Chitinophaga agri: GWR21_09320
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Entry
GWR21_09320 CDS
T06416
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
chih
Chitinophaga agri
Pathway
chih03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
chih00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
GWR21_09320
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
chih03019
]
GWR21_09320
Enzymes [BR:
chih01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
GWR21_09320
Messenger RNA biogenesis [BR:
chih03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
GWR21_09320
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
Utp25_C
CMS1
Cas3-like_C_2
ERCC3_RAD25_C
MogR_DNAbind
AAA_22
Motif
Other DBs
NCBI-ProteinID:
QHS59783
UniProt:
A0A6B9ZGR2
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All DBs
Position
2424724..2426079
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AA seq
451 aa
AA seq
DB search
MSFEQLRLIEPVLKALEHEGYTAPTPIQQQAIPYVLEKRDLLGCAQTGTGKTAAFAIPLL
QLMHEDQQQQPRKGLRNIKALILTPTRELAIQIHESFTAYGKFLDLKSLVIFGGVSQHGQ
VEALKRGVDILIATPGRLLDLISQNYITLRDIKYFVLDEADRMLDMGFVHDVRRVIIKLP
EQRQSLFFSATMPPEIQTLAKTILRNPAKVEVTPVSSTAETITQSVYFVSKNDKRNLLLH
ILKDASIKTLLVFARTKHGADRVVKDLNKAEITAEAIHGNKSQNARQRALNNFKSQQTRV
LVATDIAARGIDIDELTHVVNYELPNVPETYVHRIGRTGRAGANGIAISFCEPEEKAFLK
DILKLIAVEIPVVTAQPFHNGDSLSTPAPKPAPQQKPKPQHPRDNKGGFSRNRQGVVNPR
GAKGNSGGNRNGGGNSGGNGQQQRRKPQQQH
NT seq
1356 nt
NT seq
+upstream
nt +downstream
nt
ttgtcatttgaacagttaaggcttatagagcccgttttgaaggcactcgagcacgagggc
tataccgcccccacgcctattcagcaacaggccatcccatatgtactcgaaaagagagac
ctccttggttgcgcccagaccggtaccggtaaaacagccgcatttgctatacccctgctg
caattaatgcatgaagaccagcagcaacaacctcgtaaaggccttcgtaacatcaaggcg
ctgatattaacacctacccgtgagctggccattcagatccacgaaagctttaccgcatat
ggtaagttcctcgatctgaaaagcctcgtgatcttcgggggtgtgtcacaacatggtcag
gtagaagccctcaaaagaggcgttgacatcctgatcgctacacctggtcgcctgctggat
ctcatcagtcagaactatattacccttcgggatataaagtattttgtactggatgaagcc
gacagaatgctggacatgggctttgtacacgacgtaagacgtgtgatcatcaaactgcct
gaacagcgtcagtccctcttcttctctgcgactatgccgcctgagatccagacgctggct
aaaaccattctccgtaatccggcaaaagtggaagtaacccctgtatcatctacagcggaa
acgatcacacagtccgtttactttgtgagcaaaaatgataaacgcaacctgctgctacat
attctgaaagatgcatctatcaaaacactactcgtatttgcccgtaccaaacacggtgct
gacagagtggtaaaagatctgaataaggcagagatcacggcggaagcgatccatggtaat
aaatcacagaatgcccgtcagcgtgcgctgaataatttcaaatcgcagcaaacaagggta
ctcgtagccaccgatatcgccgccagaggtatcgatatcgatgaactgacgcacgttgtc
aactacgaactgccaaacgttcctgaaacctatgtacaccgtataggtcgtaccggtcgt
gcaggcgctaacggtatcgctatctccttctgtgaaccggaggaaaaagcattcctgaaa
gacatcctgaaactgatcgctgttgaaatacccgtagtcactgcgcagccattccataat
ggtgacagcctttctacaccagcgccaaagcctgctccacagcagaagcccaagccacaa
cacccgagagataacaaaggtggattttccaggaacagacagggtgtagtgaacccaaga
ggcgcaaaaggaaatagtggcggtaatcgcaatggtggtggcaacagtggtggtaatgga
cagcaacagcggagaaaaccacaacagcagcattaa
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