Chitinophaga agri: GWR21_11945
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Entry
GWR21_11945 CDS
T06416
Name
(GenBank) Fpg/Nei family DNA glycosylase
KO
K10563
formamidopyrimidine-DNA glycosylase [EC:
3.2.2.23
4.2.99.18
]
Organism
chih
Chitinophaga agri
Pathway
chih03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
chih00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
GWR21_11945
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
chih03400
]
GWR21_11945
Enzymes [BR:
chih01000
]
3. Hydrolases
3.2 Glycosylases
3.2.2 Hydrolysing N-glycosyl compounds
3.2.2.23 DNA-formamidopyrimidine glycosylase
GWR21_11945
4. Lyases
4.2 Carbon-oxygen lyases
4.2.99 Other carbon-oxygen lyases
4.2.99.18 DNA-(apurinic or apyrimidinic site) lyase
GWR21_11945
DNA repair and recombination proteins [BR:
chih03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
DNA glycosylases
GWR21_11945
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
H2TH
Fapy_DNA_glyco
NFACT_N
Ribosomal_S13
Motif
Other DBs
NCBI-ProteinID:
QHS60288
UniProt:
A0A6B9ZD75
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All DBs
Position
complement(3045149..3045928)
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AA seq
259 aa
AA seq
DB search
MPELPDLQVFSHNLDKQLSGKVVKEVHIKNTKRAKESAAAFRKALEGEKLEKVYREGKEL
RFKFKHDVVLGMHLMLHGKLFFFEEENTNKHPIIELLFEDKTGLVLTDYQGMAVPTLNPE
EVDVPDALSDDMTVKFLQEQLSKKKTVVKKVLLDQHIIRGIGNAYADEILWEAGISPFSV
SNKIPAAKIKALHTAIHKVLKEAEKDIRKAHPDIIAGEVRDFLKIHQPKLTHSPTGGAIA
QKELNGRKTYYTDEQELFE
NT seq
780 nt
NT seq
+upstream
nt +downstream
nt
atgcccgaattaccagacttacaggttttcagtcacaacctggacaaacagttgtccgga
aaagtggtgaaagaagtacacataaaaaatacgaagagagccaaggaaagtgcggctgct
tttagaaaagcactggaaggagagaagctggaaaaggtgtacagggaaggcaaggaattg
cggtttaagtttaagcatgacgtagtgctgggaatgcacctgatgctgcatgggaaactg
tttttcttcgaagaagagaataccaataaacaccccatcattgaactgttgtttgaggat
aagaccggccttgtgctgacagactaccaggggatggcagtacctaccctcaacccggaa
gaagtggatgtgcctgatgcactatcggacgatatgaccgttaaattcctgcaggaacaa
ctcagtaaaaagaagacagttgtgaagaaggtgttactggatcagcatatcatcaggggc
atcggaaatgcctatgcagatgagatcttatgggaggcaggtatatcccctttttccgtc
agtaacaagatacctgctgcaaagatcaaagcactacatactgctatccataaggtgctg
aaagaagcggagaaagatattagaaaagctcacccggatatcatcgccggtgaagtacgc
gatttcctgaaaatacaccagcctaaactaacgcatagtcctacagggggcgccattgct
caaaaggagctgaatggccgaaaaacctactatacggacgaacaggaactattcgaataa
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