Chitinophaga agri: GWR21_15705
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Entry
GWR21_15705 CDS
T06416
Name
(GenBank) RtcB family protein
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
chih
Chitinophaga agri
Brite
KEGG Orthology (KO) [BR:
chih00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
chih03016
]
GWR21_15705
Enzymes [BR:
chih01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
GWR21_15705
Transfer RNA biogenesis [BR:
chih03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
GWR21_15705
Prokaryotic type
tRNA splicing ligases
GWR21_15705
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
DUF4402
PHD20L1_u1
Motif
Other DBs
NCBI-ProteinID:
QHS60988
UniProt:
A0A6B9ZF36
LinkDB
All DBs
Position
complement(3962620..3964020)
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AA seq
466 aa
AA seq
DB search
MGNLRTKELSKIGYTNDRARSLVINTISKHFKHHTREQLITLLTAVKETPAQYLRDEILG
KIAATFIDDVEECHHQEFSLLEETGRLKIYGGKEIEHGAKKQMEVAMSLPVTVQGALMPD
AHHGYGLPIGGVLATENAVIPYAVGVDIGCRMALSIFDEGESFIKRYAYQMKVALKEWTH
FGMEGGLEVMQEHAVLDDPAFQLTDMLRKLQQKAARQLGSSGSGNHFVEFGLVTLAEDNT
LGLPAKEYVALLSHSGSRGLGANVAMHYTRIAMDTCKLPREAQQLAWLDMNSEAGQEYWL
SMQLAGDYAKACHDRIHANLAKALGIQPLAIIENHHNFAWQDTLADGRKVIVHRKGATPA
HKGEMGIIPGSMTTAAYIVSGKGEEQALHSASHGAGRAMSRKRAKESMTVSGLKKMLAAA
NVTLIGGSVEENPLAYKDIETVIAAQDELVAIEGRFLPRIVRMYKE
NT seq
1401 nt
NT seq
+upstream
nt +downstream
nt
atgggcaatttacgcacaaaagaactgagtaagatcggttatacgaatgaccgtgcaaga
agtctggtcattaatacaatttcaaaacattttaagcatcataccagggagcagctgatc
acactactgacagctgtgaaagagacacctgcgcagtatctccgggatgagatactggga
aagatcgctgcgacatttatagacgacgtagaagagtgccatcaccaggagtttagtttg
ctggaagaaaccggcaggctgaaaatatacggtggtaaggagatcgagcatggcgcgaag
aaacagatggaggtcgctatgtcgctgccggtaaccgtacagggagcactgatgccggat
gcgcatcacggttatggtttgccgatcggtggtgtgcttgctacggagaatgcagtgatc
ccttatgcggtgggcgtggatattggttgccgcatggcgttatcgatatttgatgaaggt
gagagtttcattaaaagatatgcgtatcagatgaaggtggcattgaaggaatggacgcac
ttcgggatggaaggcggactggaagttatgcaggaacatgccgtactggatgaccctgcg
tttcagttgaccgacatgttacggaagctacagcagaaagcggcacgtcagctgggcagt
tcaggcagcgggaatcactttgttgagtttggactggtgacgttagcggaggataatacc
ctgggattgccggcaaaggaatatgtggcgttgttgtcgcattccggtagccgcggactg
ggcgccaatgtggcgatgcattataccaggatcgccatggatacctgtaagctgccaaga
gaggcgcagcaacttgcctggctggatatgaacagtgaagcaggacaggagtactggctc
agcatgcagctggcaggagattatgcgaaggcctgccatgacaggatacacgctaacctg
gctaaagcactgggtatacagccgctggcgatcattgaaaaccatcacaatttcgcctgg
caggatacgctggcagatggcagaaaggtgatagtacatcggaaaggcgctacgccagcc
cacaaaggtgagatgggcatcattcccggcagtatgaccacggcagcctatatcgtgtcc
ggtaagggcgaagaacaggcattacactctgcttcccatggtgcgggcagagcaatgagc
cggaagcgggccaaagagagtatgaccgtatcaggattaaagaagatgctggcagctgcg
aatgtaaccctgataggtggcagtgtggaagagaatccgctggcctataaggatattgaa
actgtgatcgcagcacaggatgaattagtggccatagaaggaaggttcctgccacgtatt
gtaagaatgtacaaagaataa
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