Chitinophaga agri: GWR21_20045
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Entry
GWR21_20045 CDS
T06416
Name
(GenBank) ATP-dependent helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
chih
Chitinophaga agri
Pathway
chih03420
Nucleotide excision repair
chih03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
chih00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
GWR21_20045
03430 Mismatch repair
GWR21_20045
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
chih03400
]
GWR21_20045
Enzymes [BR:
chih01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GWR21_20045
DNA repair and recombination proteins [BR:
chih03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
GWR21_20045
MMR (mismatch excision repair)
Other MMR factors
GWR21_20045
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
PDDEXK_1
AAA_19
UvrD_C_2
AAA_30
DUF3799
AAA_11
Motif
Other DBs
NCBI-ProteinID:
QHS61810
UniProt:
A0A6B9ZHC3
LinkDB
All DBs
Position
complement(5038060..5041257)
Genome browser
AA seq
1065 aa
AA seq
DB search
MSRDQYQHHFREIYARLNRQQRQAVDQTEGPVMVIAGPGTGKTQILASRIGKILQDTSYH
PQHILCLTYTDAGTIAMRKRLTSFLGPDAYRVNIHTFHSFCHEVIQDNLGLFDKHKLDPV
SELEKVQLLKKLIDGFTKDNPLKRYRGDVYYDMQNLAHLFSSMKKEGWTVEYVKAAIVSY
MESLPFRDDFMAKKAAGVYSKGDLRLDKIAREKEKMVRLQAAVEQFPVYTELMLAANRYD
FDDMINWVTSAFEDHPDLLADYREKYQYILVDEYQDTSGIQNKLVQLLTGDQQNPNIFVV
GDDDQSIYRFQGASIENMALFAETFASQLHTIVLTYNYRSVQPVLDVAMSLIAHNGKSRL
VNQLDGLNKKLIAVKGTDLAPSYPVIRRYHTPRDEMAGITQHIAGLLDSGVKPGSIAVIY
RENKYGEELVHYCRLQQLPFYSKRSLNLFDIPFARKVLTILRYIAREIDTPYSGDELLFS
ILHYDFYDIPAIEIAKISIRAAEKGYREKSSMRQYLQEWAQTRHLTLFTPAPEQALADFS
NTMEKLIKDAHNLPLQQLFAAIINECGILSHVMHSPEKAWLMKVLQALFDFVKEETHRNP
DLALVPFMDTVRLMEHSGIIIPVVHISGKETGINLLTAHGAKGLEFEYVFIAGANAHLWE
ENTRGNTGFSYPDTLFTTTVTSTDEQELRRLFYVAMTRAEQFLYISYPEYKTDGKPLEPS
LFITEILDQHPLTVEKVTIPAEVLFRFESLQYTRGIAPQIAADDASFIDNLLAGFTMSVT
ALNNYLDCPLGFYYKNLVRVPSGRSEATAFGSAVHYALEKLFQKMQDSGRYEFPSKEAFI
RDFTWSMLRNRESFTRESLSRRLEYGREILDHYYDKWLPHWNKVVSVERNIRNVVVSGVP
LKGKIDKLEFDGNLVNVVDYKTGDYEKTIKEYQKFVRPDQQHPHGGDYWRQAVFYKILLD
NYQQKNWQVVSTEFDFIEPNKQKHYHREKVVISPQDVHLVTDQIVSAWTRIQNREFYTGC
GKKDCVWCNFVKENKLYVTLHDISDADEADISYLPDRLQHPLPDS
NT seq
3198 nt
NT seq
+upstream
nt +downstream
nt
atgtccagagatcagtaccaacatcatttcagggaaatatatgcccgcctgaacaggcag
cagcgtcaggccgttgaccagaccgaaggccccgttatggtcattgccggccctggcacg
ggcaaaacccagatactggcctcccgtatcggaaagatcctgcaggataccagctatcat
ccgcagcacattctctgcctgacgtataccgatgctggtaccattgccatgcgtaaacgc
ctcaccagcttcctcggccctgatgcctaccgtgtcaatattcataccttccattcgttc
tgccatgaagtcattcaggataatctcggcctgtttgacaaacataagctggaccctgtc
tcagaactggagaaagtacagctgctgaaaaaactgattgacggtttcacaaaagacaat
ccgctcaaacgctacagaggcgatgtatactatgacatgcaaaacctggcccatcttttt
tcctccatgaaaaaggagggctggacggtggagtatgtcaaggcagctatcgtcagctac
atggaaagtctgccctttcgggatgacttcatggccaaaaaggccgctggtgtttactcc
aaaggagacctccgcctggataagatcgcccgggaaaaagaaaaaatggtgcggctacag
gctgctgtcgaacagtttcctgtatatacggagttaatgctcgctgcaaaccgttatgac
tttgatgacatgatcaactgggtgaccagcgctttcgaagaccatccggatctgctggcc
gactaccgggaaaaataccagtacatccttgttgatgaataccaggataccagtggcata
cagaacaaacttgtgcaactgctcactggtgaccagcaaaaccccaatattttcgtagtg
ggtgatgatgatcagtccatctaccgcttccagggcgccagtattgagaacatggcactg
tttgccgaaacctttgccagccagttacatactatcgtactaacatataactatcgttcc
gtacaacccgttctggatgtagccatgtcactgattgcccataatggcaaatcacgcctg
gtcaatcagcttgacggccttaataaaaagctgattgcggtgaaagggaccgacctggcg
ccttcctacccggtcatcaggcggtatcatactccgcgtgatgaaatggccggtattaca
caacatatcgctggcttactggatagtggggtaaaacctggtagcattgccgtgatctac
cgggaaaacaaatatggggaagaactggtacactactgccggctgcagcaactgcctttt
tactctaaacgcagcctgaatctctttgatatcccctttgcccgtaaggtattgactata
ctacgttacattgccagggagatcgatacaccctatagtggtgacgagctcctgttctcc
atactgcactatgacttttacgacattccggccatagaaatagctaagatcagtatccgc
gcagcggaaaaagggtacagggaaaaatcttccatgcggcagtacctgcaggaatgggca
cagacaagacacctgacactgttcacaccagcacctgaacaggcgctggccgacttctcc
aacaccatggagaagctgatcaaagacgctcataatcttcccctgcaacagttgtttgca
gctattatcaatgaatgcggcatcctctctcatgtgatgcactcgcctgaaaaggcctgg
cttatgaaggtcctgcaggccctctttgattttgtcaaagaagaaacgcaccgtaatcca
gacctggcactggtgccttttatggataccgtccgactcatggagcatagtgggattatc
atcccggttgtacacatctcaggtaaagagaccggtatcaacctgctgaccgcccatggg
gctaagggactggagtttgaatatgtgttcattgccggcgcaaatgcacatctttgggaa
gaaaataccagggggaataccggcttctcctatcctgatacactctttaccacaaccgtc
accagtactgatgaacaggagttgcggcgcctgttctacgtggccatgacccgtgcagag
caattcctctatatcagttatcctgaatataaaacagatggcaaaccgctggagcctagt
ctgtttattactgaaatactggaccagcacccgctgacagtagaaaaggtgaccattccg
gcagaagtgttattcaggttcgaatcattgcaatacacccggggcatagcaccacagata
gctgctgatgatgcttctttcattgacaatctcctggctggttttaccatgagtgtaact
gcactcaataactacctggactgccccctgggcttctactataaaaacctcgtccgggtg
ccctccggccgttcagaagcgacagcgttcggatctgctgtacactatgcactggaaaaa
ctctttcagaaaatgcaggacagcggacgatatgagttcccatccaaagaagcattcatc
agggattttacctggagtatgctgcgtaacagggagagcttcacccgcgagtccctgtca
agaagactggaatatggtagggagattcttgatcattactacgataaatggctaccacac
tggaataaggtggttagcgtagaaagaaatattcgtaatgtagtggtcagcggtgttcct
ctaaaaggcaagatcgacaaacttgaatttgacggtaacctggtcaatgtcgttgattac
aagaccggcgattatgaaaaaaccatcaaagaataccagaaattcgtgcgtcccgaccag
cagcatcctcatggaggcgactactggcgacaggccgttttctataagatactcctggat
aactaccagcagaagaactggcaggtggtcagtacagagttcgacttcattgaaccgaat
aagcaaaagcattatcaccgggagaaagtggtgatctccccccaggacgtacacctggta
accgaccagatcgtatctgcctggaccaggatccagaacagggagttttataccggttgc
ggtaaaaaggactgtgtctggtgcaattttgtaaaggagaacaagctatatgtaaccctg
cacgacatcagtgatgcagatgaggcagatatcagctacctgcccgaccggctgcagcac
cccctgcctgatagttga
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