Chitinophaga agri: GWR21_28270
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Entry
GWR21_28270 CDS
T06416
Name
(GenBank) sigma-70 family RNA polymerase sigma factor
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
chih
Chitinophaga agri
Pathway
chih02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
chih00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
GWR21_28270
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
chih03021
]
GWR21_28270
Transcription machinery [BR:
chih03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
GWR21_28270
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r4
Sigma70_ECF
HTH_23
UPF0122
HTH_11
GerE
Sigma70_r2
HTH_40
HTH_28
HTH_Mga
Phage_antitermQ
HTH_17
HTH_Crp_2
Methyltransf_PK
HTH_5
Motif
Other DBs
NCBI-ProteinID:
QHS63343
UniProt:
A0A6B9ZQL8
LinkDB
All DBs
Position
complement(7105074..7105652)
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AA seq
192 aa
AA seq
DB search
MNDFIHTDTDQQLLSLIKNGSETAFQQLFQRHWEKLYTTASKKLGDQELARELVHDLFLD
LWRRRQELAIMNLPAYLGKALQYRIINKLIAKKDEFFFELLDNTEESLYKADQALLEKDL
TALIISWAEVLPERRRQIFIQYYLHHLTTQEIADNLQLSRKTVQNQLSISIQDLKAHFGH
LLILLVLLDDTL
NT seq
579 nt
NT seq
+upstream
nt +downstream
nt
gtgaacgacttcatacataccgacaccgaccaacagctgctcagtcttattaaaaacggc
tcagaaacggccttccagcaattatttcaacggcattgggaaaagctgtatacgacagcc
agtaaaaagctgggtgaccaggaactggcccgggaacttgtacatgacctttttctggac
ctgtggcgtcgcaggcaagaactggccatcatgaacctgcctgcctacctgggaaaagcc
ctccaataccgtattattaataaactcatcgctaaaaaagacgaattcttcttcgaattg
cttgacaatacagaagaatccctttataaagcagatcaggcattactggaaaaagacctc
acggccctgatcatttcatgggcagaagtattgccggaaagacgccggcagatctttatt
caatactatctccaccacctcaccacccaggagattgccgataaccttcagctctcccgt
aagacagtacagaaccagctcagcatctctatacaggacctgaaagcccatttcgggcac
ctcctcatcctgctcgtcctgctggatgacacgctctga
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