KEGG   Chitinophaga sp. 180180018-2: UNH65_04495
Entry
UNH65_04495       CDS       T11447                                 
Name
(GenBank) RNA polymerase sigma factor
  KO
K23514  RNA polymerase sigma-19 factor, ECF subfamily
Organism
chii  Chitinophaga sp. 180180018-2
Pathway
chii02020  Two-component system
Brite
KEGG Orthology (KO) [BR:chii00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    UNH65_04495
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:chii03021]
    UNH65_04495
Transcription machinery [BR:chii03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     UNH65_04495
SSDB
Motif
Pfam: Sigma70_r4_2 Sigma70_r2 Sigma70_r4 HTH_23 HTH_20 HTH_40 Sigma70_ECF HTH_10 PF0610-like_N GerE HVO_A0261_N HTH_24 HTH_30 HTH_28 HTH_38 DUF2805 HTH_Tnp_ISL3 HTH_22 DUF6362 DUF722 Phage_terminase
Other DBs
NCBI-ProteinID: WTM42843
LinkDB
Position
complement(1097037..1097636)
AA seq 199 aa
MSNEDVVLLRKLQQGDTGAFITLYNQYHPSLYTYILHFINIPELAEDVLQEVFTKIWEIR
ERINPELCFSGYLYRITRNRVFKLLKKISADEQLRTQTMQELHRQTEDADTRLLWKQYES
LLHEAIAQLPPQRQRVFRLCREESKSYEEVATELGISRNTVKEHMVLAMRSIQFFLYKHT
DGVFPILLFSAMILSYEKN
NT seq 600 nt   +upstreamnt  +downstreamnt
gtgagcaatgaagatgtcgttttgctgaggaagttacagcagggagatactggggcattt
attactttatacaaccaatatcatccgtcgctttacacttatattctccacttcattaat
atccctgaacttgcagaagatgtactgcaggaggtatttaccaagatctgggagataagg
gagcggatcaatcctgagctgtgtttcagcggctatctttaccgtattacccgtaaccgt
gtatttaaattactgaagaagatatcggccgacgagcaactccggacgcaaacgatgcag
gaactgcaccggcaaaccgaagatgcggatacccgcctgctttggaagcaatacgaatcc
cttttgcatgaagccattgcccagcttccccctcagcgccagcgtgttttcaggctgtgc
agggaggaaagtaaaagttatgaggaagtggctacggaactggggatttccaggaatact
gtgaaagagcatatggtcttggcgatgaggagtatacagttttttttgtataagcatacg
gatggggtgtttcccatcctcttattttccgcgatgatcttaagctacgaaaaaaattaa

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