Chitinophaga sp. 180180018-2: UNH65_13230
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Entry
UNH65_13230 CDS
T11447
Name
(GenBank) RNA polymerase sigma-70 factor, ECF subfamily
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
chii Chitinophaga sp. 180180018-2
Pathway
chii02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
chii00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
UNH65_13230
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
chii03021
]
UNH65_13230
Transcription machinery [BR:
chii03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
UNH65_13230
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r2
Sigma70_r4
GerE
Sigma70_ECF
HTH_40
HTH_20
HTH_24
HTH_23
HTH_22
HTH_10
HTH_11
Terminase_5
HTH_30
UPF0122
DUF1492
PF0610-like_N
SusR_C
DUF6115
HTH_17
HTH_IclR
Motif
Other DBs
NCBI-ProteinID:
WTM44576
LinkDB
All DBs
Position
complement(3330377..3330919)
Genome browser
AA seq
180 aa
AA seq
DB search
MLQLSNEEIVKGIRHRNKDVFEAVFKQFAPSMYNIAVRYVKSEEDANDMVQDVFLNLWKG
AENLDERAPINHYLARATVNTCLNRIKKDQRQEVYTKEQMQTATPADNSHSLLEHKELEA
KYRSALEKLPEQCRRVFEMSRLKGLSPAEIAEQLNISINTVYAHLTTALKRLRVDLINKS
NT seq
543 nt
NT seq
+upstream
nt +downstream
nt
atgttgcaactgagtaacgaagaaatagtaaaaggcatccggcacaggaataaagatgta
tttgaggctgtttttaaacagttcgccccttctatgtataatattgctgtcaggtatgta
aagagtgaggaagatgcaaacgatatggtacaggatgttttcctcaatctgtggaaaggt
gcggaaaacctggatgagcgtgcccctatcaatcattatctcgcaagagcaactgtaaat
acctgtttaaacagaatcaagaaagatcagcgacaggaagtatataccaaggaacaaatg
caaactgctactcctgccgacaactcccactccctgctggaacacaaggaactggaagcc
aaataccgctctgcccttgaaaaattaccggaacaatgtcgtcgtgtttttgaaatgagc
cgcctgaaaggattgtcacccgccgaaatcgctgaacaactgaacatctctataaatact
gtatacgcccatcttaccaccgctttaaaacggctgcgcgtagatcttattaataaatca
taa
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