Chitinophaga sp. 180180018-2: UNH65_17580
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Entry
UNH65_17580 CDS
T11447
Name
(GenBank) RNA polymerase sigma-70 factor, ECF subfamily
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
chii Chitinophaga sp. 180180018-2
Pathway
chii02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
chii00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
UNH65_17580
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
chii03021
]
UNH65_17580
Transcription machinery [BR:
chii03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
UNH65_17580
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r2
Sigma70_r4
GerE
HTH_40
HTH_23
Sigma70_ECF
HTH_7
HTH_Tnp_ISL3
HTH_11
HTH_10
UPF0122
HTH_20
HTH_16
DNA_pol3_delta_C
CPSase_L_D3
HTH_28
PhyR_sigma-like
HTH_24
HTH_30
Fe_dep_repress
TnsD
Xre-like-HTH
HTH_DeoR
DUF3489
Motif
Other DBs
NCBI-ProteinID:
WTM45441
LinkDB
All DBs
Position
complement(4450364..4450948)
Genome browser
AA seq
194 aa
AA seq
DB search
MEQRTTYHNHELLVRIAEGDEKAFRIFFDKYRNRFYAVVLKMTRSEALAEDMVQEIFLKI
WQNRASLPEITNPDSYFFTSLYRQVFRHYKRAALDRNLLKMVAEAPSFQSITDETVLARE
GERLIEEAISRLPAQQQQVFRLSKQDGFSREQIAEQLNISPHTVKNHLADAMKSVKSYLS
HSILIYIMLASLLD
NT seq
585 nt
NT seq
+upstream
nt +downstream
nt
ttggaacaaaggacaacatatcataaccacgaacttttggttcgcatcgcggaaggggac
gaaaaggctttccgtatcttttttgataagtaccgaaatcgtttttatgcggtggtgcta
aaaatgacgagatccgaagctttagcggaggatatggtacaagagatttttctcaagata
tggcaaaatagagcctctcttccggaaattactaacccagattcttatttttttacatcg
ctttaccggcaagtatttcgccactacaaaagagccgctttggacaggaacctattgaaa
atggtggccgaggcgcccagttttcaaagtatcactgacgagactgttctggcgcgcgaa
ggtgaacgactaatcgaggaagctatatcccgattaccagctcagcagcaacaggtattt
aggcttagcaaacaagatgggttcagccgcgaacaaattgcagaacagcttaatatttca
ccgcacacagtcaaaaatcatcttgccgacgctatgaagtccgttaaatcctatttaagc
cattctatattgatttacattatgttagcatcgttattggattaa
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