Chitinophaga sp. 180180018-2: UNH65_18720
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Entry
UNH65_18720 CDS
T11447
Name
(GenBank) RNA polymerase sigma-70 factor, ECF subfamily
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
chii Chitinophaga sp. 180180018-2
Pathway
chii02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
chii00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
UNH65_18720
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
chii03021
]
UNH65_18720
Transcription machinery [BR:
chii03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
UNH65_18720
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r2
Sigma70_r4
Sigma70_ECF
HTH_Tnp_ISL3
HTH_10
RUNDC1
HTH_Mga
GerE
HTH_38
DUF134
KIAA1328
HTH_5
Motif
Other DBs
NCBI-ProteinID:
WTM45666
LinkDB
All DBs
Position
complement(4738697..4739311)
Genome browser
AA seq
204 aa
AA seq
DB search
MHVNMEELLYRIQFHDDQQAFKALYEQLVFRLYQFAFAFLKQRQAAEEIANDVFVKLWER
RYTLDKIGDLKVYLYVAVKNAALNHLRKKDVIGADLDSLHVQHFHLEPDTENRLLTHELQ
QAIDDAIRQLPSKCRLIFKLVKQDELSYREVANILGLSTKTIDAQLTIAMKKLAGSLQSF
APCNTTPRTSGKVGTALKKFFSLF
NT seq
615 nt
NT seq
+upstream
nt +downstream
nt
atgcacgtgaacatggaagagttactttatcgcatacaatttcatgacgaccaacaggca
tttaaggcgctttacgagcagctggtgttcagattataccagttcgcattcgcctttctg
aaacaacggcaggcagcagaggagatagcaaacgacgtttttgtgaagctatgggaaagg
cgctatacgcttgataagattggtgatttgaaagtgtatctctatgttgccgtaaaaaat
gcggccctcaatcacctgcgcaaaaaggatgttatcggggctgacctcgattccctgcac
gtacaacattttcacctcgaaccagacaccgaaaaccgcctgctcacacatgagttgcaa
caggcaattgatgacgccatccggcagctgccctctaaatgcaggctgatcttcaaattg
gtgaaacaggatgagctttcctacagggaggtcgccaatatcctcggtctctctacaaaa
acaatcgacgctcagttaaccatcgcgatgaaaaaactggcaggaagcctgcaatctttt
gcgccctgcaacactactccccgtacgtccggaaaggtgggcaccgccttaaaaaaattt
ttttccctcttttag
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