Chitinophaga sp. MD30: CK934_01030
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Entry
CK934_01030 CDS
T10354
Name
(GenBank) RNA polymerase sigma-70 factor
KO
K23514
RNA polymerase sigma-19 factor, ECF subfamily
Organism
chim Chitinophaga sp. MD30
Pathway
chim02020
Two-component system
Brite
KEGG Orthology (KO) [BR:
chim00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
CK934_01030
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
chim03021
]
CK934_01030
Transcription machinery [BR:
chim03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
CK934_01030
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sigma70_r4_2
Sigma70_r4
Sigma70_ECF
Sigma70_r2
GerE
HTH_24
HTH_11
HTH_23
HTH_Mga
HTH_Tnp_ISL3
HTH_AsnC-type
HTH_40
CoxE_N
PCI
TnsD
HTH_10
HTH_17
DUF8612
HTH_Tnp_4
PF0610-like_N
DUF2774
HTH_28
Motif
Other DBs
NCBI-ProteinID:
ASZ09654
LinkDB
All DBs
Position
complement(312436..313002)
Genome browser
AA seq
188 aa
AA seq
DB search
MQMAINYNSPDDELLVLWRNGDLQAFDELFRRYFQPLHQYAVKNLRNAMLAEEIVMDVML
RIWNTNGAIHCPAGFKPYILRALKNAIFNHFRSSSPAIISWEELPAGQDIPTYNSPDHKL
IHDETRELYLAALSSLSAKKREVFILSRDERLTYKEIAHQLNISVNTVENYIAASLAHMR
EKMNVNKL
NT seq
567 nt
NT seq
+upstream
nt +downstream
nt
atgcaaatggcaataaattataactcgccggatgatgaactgttggtgctttggaggaac
ggtgatctccaggcattcgatgaattgtttagacgctatttccaacccctccatcaatat
gctgtcaaaaacctgcggaatgccatgctggccgaagaaatcgtcatggatgtaatgctc
cgcatctggaacacaaatggcgccattcactgccccgccggattcaaaccatatatatta
cgtgccttaaaaaatgccatcttcaaccatttcagatcatccagtccggctatcatatca
tgggaagaactacctgccggccaggatattcccacctacaactccccggatcacaaatta
atacatgacgaaacccgcgaactatacctcgccgcactctcctcgctgtctgctaaaaaa
agagaagtctttatcctcagccgcgacgaacgcctcacctacaaagagatcgcccatcaa
ctcaatatctccgtcaataccgtagaaaactatatagccgcttccctcgcccacatgaga
gagaagatgaatgttaacaaattgtaa
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