Chitinophaga sp. MD30: CK934_01965
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Entry
CK934_01965 CDS
T10354
Name
(GenBank) excinuclease ABC subunit A
KO
K03701
excinuclease ABC subunit A
Organism
chim Chitinophaga sp. MD30
Pathway
chim03420
Nucleotide excision repair
Brite
DNA repair and recombination proteins [BR:
chim03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CK934_01965
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
CK934_01965
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrA_inter
UvrA_DNA-bind
ABC_tran
SMC_N
nSTAND1
AAA_29
AAA_16
RsgA_GTPase
nSTAND3
DnaJ_CXXCXGXG
AAA_18
AAA_15
AAA_21
Viral_helicase1
AAA_22
cobW
Motif
Other DBs
NCBI-ProteinID:
ASZ14766
UniProt:
A0A249T4F2
LinkDB
All DBs
Position
555160..558027
Genome browser
AA seq
955 aa
AA seq
DB search
MAKKKNNVSVEASVPADEQIAVFGARVHNLKNLDLQLPKNKLVVITGISGSGKSSLAFDT
IYAEGQRRYMESFSAYARQFIGDMERPDVDKITGLSPVISIEQKTTNKNPRSTVGTITEI
YDFLRLLYARASLAYSYNTGKRMTRFSEEEIMEHLFRHYPKKKLVILAPLVRGRKGHYRE
LFEQVRKQGYLKVRVDGEILDLKERMQVDRYKIHDIELVIDRIQVQDDARVRMSQSVQKA
LQVGKGLMFVMDNDSGKVSQYSKQLMCEDTGISYEEPSPNTFSFNSPYGACPRCKGLGTI
YQINMEEVIPDYSKSIEEGGLVPLGEARDTFTYKQVQQLAKKYKFSLTKAIADIPEKALN
VLLFGDENGKLEVDMSFEESSATPYETDYEGVVNMVRRYFNDTSSDHVRTWAEGFMQLSE
CPECNGTRLKKESLYFRVDNKHIAELSAMDLDKLAAWFDGIEQRLENKQNLIAKDILKEI
RERLGFLLNVGLNYLTLNRATRTLSGGESQRIRLATQIGSQLMGITYILDEPSIGLHQRD
NMQLIDALRNLREMGNTVIVVEHDKDIMLHADHLVDVGPGAGKHGGQIIAQGTPSQILKL
NTPTAGYLNGKRSIAVPAERRKGNGKSLELKGATGNNLKNVSVKFPLGTFICVTGVSGSG
KSTLINETLYPILSKHAYNSKAVPMPYKSIKGLEHLDKVIEIDQSPIGRTPRSNPATYCG
FFTDIRQLFSQVPEAKIRGYNAGRFSFNVKSGRCDVCEGGGMRVIEMNFLPDVYVHCEKC
NGRRYNRETLEIRYKGKSISDVLDMTVDEAVEFFQPVTYIYRKVKTLQDVGLGYITLGQS
AVTLSGGEAQRVKLATELSKKDTGKTIYILDEPTTGLHFQDIQLLLNVLNKLVERGNTVL
VIEHNLDVIKMADYIVDLGPEGGAGGGTILCSGTPEEVSVCKDSHTARFLKQELA
NT seq
2868 nt
NT seq
+upstream
nt +downstream
nt
atggcaaagaaaaaaaacaatgtatctgtggaggcgagtgtgcctgcagatgagcaaata
gctgtgtttggcgccagggtccacaatctgaagaacctggacctgcagttacccaaaaac
aagctggttgtgatcaccggtatcagcggcagcggtaaatcttcgctggcatttgatacg
atctacgcggaggggcagcgacgatatatggaaagtttctctgcctatgcccgtcaattc
atcggggacatggagcgtccggatgtggacaagatcacaggactttcccctgttatttcc
atagagcagaagaccactaataagaatccgcgttctactgtagggacgattaccgagata
tatgactttctgcgtttgctttatgcacgtgcgagcctggcctattcctataatacaggg
aaacggatgacccgtttttcggaggaggagatcatggaacatcttttccgtcattaccct
aagaagaaactggtgatactggcccccttagttcgcggccgtaaagggcactaccgggag
cttttcgagcaggtgagaaaacaaggttatctgaaggtccgtgtagacggggagatactg
gatctgaaagaaaggatgcaggtggatcgttataagatacacgacattgagctggtcatc
gacaggatacaggtgcaggatgatgccagggtacggatgagccagagtgtgcaaaaggca
ttgcaggtgggtaaaggactcatgtttgtgatggataatgatagcgggaaggtcagtcag
tacagtaaacagctgatgtgtgaggatacgggtatttcttatgaggagccgagtccgaat
acgttctcattcaactctccttacggggcttgtccgcggtgtaaaggcttgggtactatt
taccagatcaatatggaagaggtgatcccggattacagcaaatccattgaagaaggcggg
ttggtaccgttaggagaagccagggatacttttacatacaagcaggtacagcagctagct
aagaagtataagttctctttaactaaagctattgctgatatcccggagaaagcgttgaat
gtattgttgttcggggatgagaacggcaagctggaggtagatatgagttttgaggagagt
agcgctacaccttatgaaaccgattatgagggggttgttaatatggtacgccgttatttc
aacgatacatcttccgatcatgtgcgtacctgggcagagggttttatgcaactcagcgaa
tgtccggagtgtaatggtacccgattgaagaaggagagtctttatttccgggttgataac
aaacatattgcggagttgagtgcgatggacctggacaagctggctgcctggttcgacggg
atcgagcagcggctggagaacaagcagaaccttattgctaaagatatattgaaagagata
cgggagcgtttgggctttttgctgaatgtgggattaaattaccttacgttgaaccgggct
acccgtactttatcgggaggggaatcgcagcgtatacggttggctactcagatcggttct
cagctgatggggatcacgtatatactggatgaacccagtattggcctgcatcagcgggat
aatatgcaattgatagatgctttgcgcaatttgcgtgagatgggtaatacagtgatcgtt
gtggagcatgacaaagacattatgctgcatgcggatcacctggtggatgtaggtccggga
gcgggtaagcatggcgggcagatcattgcacaaggtacgccatcacaaatactaaaactg
aacaccccgacggccggttatttaaacggcaaacgttctattgcggtaccggcggagcgt
agaaaaggtaatggcaagtcgctggaattgaagggagcaacgggtaataacctgaaaaat
gtgagtgtgaagttcccgttaggtacctttatctgtgtgaccggggtatcgggcagtggt
aagtcgacgctgatcaatgagacattgtatccgatcctgtcgaagcatgcgtacaactcc
aaggcggtgcctatgccttataagagtattaaggggttagagcacctggacaaggtgata
gagatcgatcagtcgccgattggtcgtacaccgaggagtaatcctgctacttactgtggt
tttttcacggatatccggcagttgttttcacaggtaccggaggccaagatccgcgggtat
aatgccgggcgtttttccttcaatgtaaaaagcggacgttgcgatgtttgtgaaggaggt
ggtatgcgggtgattgagatgaacttcttgccagatgtgtatgttcactgtgaaaagtgt
aacggcaggcgttataaccgggagacattagagatccggtataaagggaagtccatttcc
gatgtgctggatatgacggtggatgaggcggtagaattttttcaacccgtgacctatatt
taccgtaaggttaagactttacaggatgtcggacttggctatattaccttgggtcaatct
gccgttactttatcaggcggggaggcacaacgggtgaagctggccactgagttatccaaa
aaggacaccggtaaaaccatttatatattagatgagcccactaccggtttgcatttccag
gatatacagctgttgctgaatgtgctgaataagctggtagagcggggtaatactgtgctg
gtgatagaacacaacctcgatgtgatcaagatggcagattatattgtcgatctgggacca
gagggcggcgcaggcggaggtactatcttgtgctccggtacgccggaagaggtgtctgta
tgtaaggacagtcatactgcgcggttcctgaaacaggagttggcataa
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