Chitinophaga sp. MD30: CK934_04880
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Entry
CK934_04880 CDS
T10354
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
chim Chitinophaga sp. MD30
Brite
KEGG Orthology (KO) [BR:
chim00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
chim03016
]
CK934_04880
Enzymes [BR:
chim01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
CK934_04880
Transfer RNA biogenesis [BR:
chim03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
CK934_04880
Prokaryotic type
tRNA splicing ligases
CK934_04880
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Motif
Other DBs
NCBI-ProteinID:
ASZ10361
LinkDB
All DBs
Position
complement(1273744..1275156)
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AA seq
470 aa
AA seq
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MSNHNIRLKDLSKLGYTDDRSRSIAIGILNKQSRHIARELLIQTLTAIHQQPQQWLQDEV
WHKLAATLLPEEEEHNYIAYELRSEQTAAPVKAFGSKHIEPAAKQQMQTCLRLPVAIQGA
LMPDAHAGYGLPVGAVLAVENALIPYGVGVDIGCRMALTLYDTGRNFLQRNTYQLKMALQ
DYTHFGMEGGLPFSQEHEVLDRKEFSYTALLKSLHGKAVRQLGTSGSGNHFVEFGNMLLY
ADNLLGLPEGNYLAILSHSGSRGLGASIAQHYTQLAMEQCRLPREARQLAWLDMNTEAGQ
EYWLSMNLAGDYAKACHDRIHLNLAKVLGLKPVAKVENHHNFAWKESLPDGRTAYVHRKG
ATPAHTGEAGIIPGNMIDGGFLVTGKGNSTSLQSAAHGAGRAMSRKKAKEKFTQSSLKKL
LSAAGVTLIGGSVEESPMAYKDIQTVMNAQEELITIHGHFTPRIVRMNKE
NT seq
1413 nt
NT seq
+upstream
nt +downstream
nt
atgagcaatcataacatacgacttaaagacctcagcaaactgggttatacagacgacaga
agccgcagcattgcaataggtatacttaataagcagtccaggcacatagccagggaactg
ctgatacaaacactgaccgctatccatcagcaaccgcagcaatggctgcaggatgaagta
tggcataaactggcagccaccttactgccggaagaagaagagcataactatatagcatat
gaactgcgctccgaacagaccgcagcaccggttaaagcattcggtagcaaacatatcgaa
cctgccgccaaacaacagatgcagacatgcctgcgcctgccggtagccatacagggcgcg
ctcatgccggatgcccatgccggttacggattgccggtaggcgctgtactcgccgtcgaa
aacgccctgatcccatatggtgtaggcgtagacatcggatgccgcatggcactcacatta
tatgataccggtcgcaacttcctccaaaggaacacctaccagctaaaaatggccttacag
gactatacccacttcggcatggaaggaggactacccttctcccaggaacacgaagtactc
gacagaaaagaattcagctacaccgccttgcttaaaagtctgcatggcaaagcagtccgc
cagttgggtaccagcggtagcggtaaccacttcgttgaatttggcaatatgctcctgtac
gcagataacctattggggcttcccgaaggtaactacctcgccatcctgtcccactccgga
tccagagggcttggggcctccattgcacaacattatacacaactcgcgatggaacaatgc
cgattgccaagagaagccagacaactcgcctggctcgatatgaataccgaagcaggacaa
gagtactggctcagcatgaacctggcaggcgattatgccaaagcctgccatgaccgcata
catctcaacctggcaaaagtacttggcttaaaaccagtcgccaaagtagaaaaccatcac
aatttcgcctggaaagagagcctgcccgatgggcgtactgcctatgtacaccggaaaggc
gccacaccggcacataccggagaagcaggtatcatccccggcaatatgatagatggtggc
ttcctcgtaacaggtaaaggcaacagcacatccctccagtccgctgcccatggagccggt
agagcgatgtccagaaaaaaagccaaagaaaaattcacacagtcatcccttaaaaagcta
ctctccgccgccggtgtcaccttgatcggaggtagcgtagaagaatctcctatggcttac
aaagacatacagacagtaatgaacgcgcaggaagaactcatcaccatacatggacacttc
accccgcgcatcgtaagaatgaataaagaataa
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