Chitinophaga sp. MD30: CK934_04975
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Entry
CK934_04975 CDS
T10354
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
chim Chitinophaga sp. MD30
Pathway
chim03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
chim00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
CK934_04975 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
chim03019
]
CK934_04975 (recQ)
03400 DNA repair and recombination proteins [BR:
chim03400
]
CK934_04975 (recQ)
Enzymes [BR:
chim01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CK934_04975 (recQ)
Messenger RNA biogenesis [BR:
chim03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
CK934_04975 (recQ)
DNA repair and recombination proteins [BR:
chim03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
CK934_04975 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
RQC
RecQ-1-like_HTH
Helicase_C
RecQ_Zn_bind
HRDC
ResIII
HTH_40
zf-CXXC
Motif
Other DBs
NCBI-ProteinID:
ASZ10378
UniProt:
A0A249SRU7
LinkDB
All DBs
Position
complement(1303199..1305400)
Genome browser
AA seq
733 aa
AA seq
DB search
MAVVKVSLLDALHEHFGFDSFKGNQEVIIKSILSGKDTFVIMPTGGGKSLCYQLPALMSP
GCALIVSPLIALMKNQVDLVRSYSSKDNVAHFLNSTLSKAQIKKVRTDLLAGKTKMLYVA
PETLTKTENLEFFRDLQISFIAVDEAHCISEWGHDFRPEYRRLKEMIEQINDKLPIIALT
ATATPKVQSDIVKNLTLRTPQVFISSFNRPNLYYEIRPKRKKELVIKDIVKFIHQHKGKS
GIIYTLNRKTTEELADMLMANNIKAVAYHAGLDPNTRAQRQDMFLLEDVEVIVATIAFGM
GIDKPDVRFVIHYNIPKSLENYYQETGRAGRDGLEGICVCYYSHKDVQKLEHLMRDKPLS
EREMGAQLINETVAYAESAVCRRKVILHYFGEQFETDNCGNCDNCRNPKEKIEVKNRVVI
VLKAIKSLEERFGADYVVNIITGKINPQITTYRHNQLEVFGEGKEFDAHFWNSLIRQMML
EGLIEKDIEEYGLLKIMDKGHKFLKKPYSIMVSLNHQFEEDGGDDKEEVAAEAHASADPV
LVEMLKDLRKKVSKEKNLPPFVIFLETSLEDMATQYPTTTQELEKIQGVSKGKAIRYGKQ
FIDVISKYVEENNIVKPDDFVMKSVVNKSGLKVFIIQNIDKKMSLETIAKNKELTLPQLL
DEMETIVASGTKLNLDYCIDEELDDYAQDEILEYFKGCETSSLALAREELIDSDYTIEQL
KLMRIKFLVEYGN
NT seq
2202 nt
NT seq
+upstream
nt +downstream
nt
atggctgttgtaaaggtaagtttgttagatgcattacacgaacattttgggttcgattcc
tttaaagggaaccaggaagtaatcataaaaagtatcctttcggggaaagatactttcgta
ataatgccaaccggtggagggaaatcactttgttatcagttacctgcgctcatgagccca
ggctgtgcactgatcgtctcccccctgatcgctttgatgaaaaaccaggtagacctggtc
cgctcttatagtagcaaagacaatgtcgcacactttctcaattcaacgctttccaaagca
cagataaaaaaagtcaggacagacctcctcgcgggtaagacaaagatgctatatgtggct
ccggagacactgacaaaaacggaaaaccttgagttcttccgcgacctgcagatctctttc
atcgccgtcgatgaagcacactgtatctccgaatggggacacgatttccgtccggaatac
cgccggctcaaagaaatgatcgaacagatcaatgataaactacccatcattgccctcacc
gcaacagctactcctaaagttcaaagcgatatcgtaaagaacctgaccctacgcacaccg
caggtgttcatctcctcctttaaccgacccaatctctactatgagatccgtcctaaaagg
aaaaaggagctggttatcaaagacatagtaaagtttatccaccagcataaaggcaaaagt
ggtatcatctatacccttaaccgcaagacaaccgaagaactggccgatatgctgatggcc
aataatatcaaagccgtagcctaccatgccggcctggaccccaacacccgcgcccaacgc
caggacatgttcctgctcgaagacgtggaagtgatcgtggccaccatcgcatttggtatg
gggatcgataaacccgatgtgcgctttgtcatacattacaacatccccaaaagcctggaa
aactactaccaggagaccggccgcgccggcagggatggcctcgaaggtatctgcgtctgc
tattactcccataaagatgtgcagaagctcgaacacctcatgcgcgacaaaccactcagc
gaacgggaaatgggcgcacaactgatcaacgaaacagtagcctatgccgaaagcgcagta
tgccgccgtaaagtcatcctgcattacttcggagaacaatttgaaacagataattgcggc
aattgtgataactgccgcaatcctaaagaaaaaatagaggtgaagaaccgcgtggtaatc
gttctcaaagcgatcaaatcgctggaagaaagattcggagccgattatgtcgtaaatatc
atcaccggcaaaatcaacccgcagatcaccacctaccgacacaatcagctggaagtattc
ggcgaaggcaaagaatttgatgcccacttctggaactctctcatccgccagatgatgctg
gaaggcctgatcgaaaaggacatagaagaatatggcctgctcaagatcatggataaagga
cataaattcctgaagaaaccctattccatcatggtctccctgaaccaccagtttgaagaa
gatggaggcgacgataaagaagaagtagcagcagaagcacatgcctccgcagatcccgta
ctggtagaaatgctcaaagacctgcgcaaaaaggtatctaaagaaaagaacctccctccc
ttcgttatcttcctggaaacctccctggaagatatggctacccaatatcctactaccact
caggaactggaaaaaatacagggagtcagcaaagggaaagccatccgctatggcaaacaa
ttcatagatgtcatctccaaatacgtagaggagaacaatatcgttaagccagacgacttc
gtaatgaagagcgtcgtcaataaaagcggcctgaaggtgttcatcatccaaaacatcgat
aaaaagatgtccctagagaccatcgcaaaaaataaagaactgacactccctcaactgctg
gatgaaatggaaaccatcgtagccagcggtactaaattaaatctcgattattgcatcgat
gaagagctggatgattatgcacaggacgagatcctggagtatttcaaaggctgcgaaacc
tccagcctggctcttgcccgcgaagagctcatcgacagcgactataccatcgaacagctg
aaattaatgcgtatcaagttcctggtagaatacggcaactaa
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