Chitinophaga sp. MD30: CK934_06005
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Entry
CK934_06005 CDS
T10354
Name
(GenBank) ribonuclease E/G
KO
K08301
ribonuclease G [EC:3.1.26.-]
Organism
chim Chitinophaga sp. MD30
Brite
KEGG Orthology (KO) [BR:
chim00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
chim03019
]
CK934_06005
03009 Ribosome biogenesis [BR:
chim03009
]
CK934_06005
Messenger RNA biogenesis [BR:
chim03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
CK934_06005
Ribosome biogenesis [BR:
chim03009
]
Prokaryotic type
rRNA processing factors
CK934_06005
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RNase_E_G
PIG-L
AHD
Diphthamide_syn
DnaJ_CXXCXGXG
Motif
Other DBs
NCBI-ProteinID:
ASZ10561
LinkDB
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Position
1533600..1535150
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AA seq
516 aa
AA seq
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MNKELIINAAPTGVEIALLEDKKLVELHHESGNPNFAVGDLYMGRVKKLIPGLNAAFVDV
GFEKDAFLHYTDLSPYIRSILKFTQQAISDKTPEGFDFTKFKNEPEIVKTGKITDVLGGK
PNILVQILKEPISSKGPRLSCEISLPGRFIVLTPFNDIVAVSKKIHSSEERKRLQKIVEA
IKAPNFGVIVRTAAEGKKTAELHEDLTTLVETWKNIQANLRGAQPPQKILSEQAKTTSIL
RDLLNESFNKIVINDKNIYTDTRAYIQKIAPEKQDIVTYYHNGAPIFDHFGITRQVKASF
GKTVNLDSGVYLIIEATEALHVIDVNSGYKSSSNNQEQNALASNLEAAAEIARQLRLRDL
GGIIIIDFIDMKLPENKKVVYEAMEKFMAQDRAKHTILPISKFGLMQITRQRVKPEVTIS
VAEDCPACKGTGKIGASVLIVDDVEKNLLYLLNHQHKGLTIHVHPILHAYLTKGFLTSKQ
WKWYFQFRKWIKVKADSNYHLTEYHFFDDSDEEIKL
NT seq
1551 nt
NT seq
+upstream
nt +downstream
nt
ttgaacaaggaacttattataaatgcggctcccacaggtgtggaaatagcgttgctggaa
gataaaaaattggtggaactgcaccacgagagtggcaatcctaactttgcggttggcgat
ctgtatatgggacgggtaaaaaaactgattcccggcctgaatgctgcttttgtcgatgtg
gggtttgaaaaggatgcttttcttcattatacggaccttagtccatatatccgttccata
cttaagtttacccagcaagctattagcgataagaccccagagggctttgactttacgaag
ttcaaaaatgaaccagagatcgtaaagacaggaaaaattacggatgtactggggggaaaa
cccaatatactggtacagatactcaaggaacccatctcttcaaaaggtccccggcttagt
tgtgaaatctctctccctggaagatttatagtgttaacaccctttaacgacattgttgcg
gtatctaaaaagatacattcttctgaagaaagaaagcggttacagaaaatagtggaggct
atcaaggcgcctaattttggtgtgatcgtacgcacagcggccgaaggtaagaagacagcg
gaactacatgaggatctgaccacattggtagagacctggaagaatatccaggctaatctt
cgcggtgcgcaacctccccagaagatactcagtgagcaggctaaaacgaccagtatactg
cgggacctgctcaacgagagttttaacaagatcgtcatcaacgataagaacatctatact
gatacccgggcttacatacagaagatcgctccggagaagcaggatatagtcacttattac
cataatggcgccccgatatttgatcattttggtattacgcggcaggtgaaggcttccttt
gggaagacggttaacctggatagcggggtatatctgatcattgaggcgacggaggcgttg
catgtgatcgatgtgaacagtggttataagagctccagcaataaccaggagcagaatgcc
ctggcctccaatctggaggcggcggcagaaatagcccgtcagttgagactccgtgatctg
ggtggtattatcatcatcgacttcatagatatgaagttgcccgagaacaagaaggtggtg
tatgaggccatggagaaatttatggcacaggaccgggctaaacacacgatacttcctatt
tccaaattcggattgatgcagatcacgcggcagcgtgtgaagccggaggttacgatctct
gtagcggaagattgtccggcttgcaagggcactggtaagatcggcgcttctgtattaata
gtggacgatgtcgagaagaacttgttatacctgttgaatcatcagcataagggattgacg
atacatgtgcatcctattctgcatgcctacctgaccaaagggttcctgacttccaagcag
tggaaatggtatttccagttcaggaaatggatcaaggtgaaggctgacagtaattatcac
cttacagaatatcatttttttgacgacagtgacgaagaaattaaattatag
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