Chitinophaga sp. MD30: CK934_06180
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Entry
CK934_06180 CDS
T10354
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
chim Chitinophaga sp. MD30
Brite
KEGG Orthology (KO) [BR:
chim00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
chim03032
]
CK934_06180
03400 DNA repair and recombination proteins [BR:
chim03400
]
CK934_06180
Enzymes [BR:
chim01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
CK934_06180
DNA replication proteins [BR:
chim03032
]
Prokaryotic type
DNA Topoisomerases
CK934_06180
DNA repair and recombination proteins [BR:
chim03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
CK934_06180
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_I
Top1B_N_bact
DUF2293
Motif
Other DBs
NCBI-ProteinID:
ASZ10592
UniProt:
A0A249SSJ1
LinkDB
All DBs
Position
1570945..1572051
Genome browser
AA seq
368 aa
AA seq
DB search
MDNLSAIITDPVAAARAIKLRYVKAGTTGYSRQRHGKEFHYLDQHGERIRDTETLLRIRG
LVLPPAWEQVWICPYANGHLQATGIDALGRKQYRYHATWAKVRNETKYDRLLQFGEKLPQ
IRRRIQVSLRKRTLDKEKVLAIALSVMQETLIRVGNSAYEKLYGSHGLTTLRNQHVKING
NTAFFQFKGKKGVMHKIALKHASLARLLQKMKDIPGQELFQYYDESGEHKGLDSGDINEY
LKECAEEDFTCKDFRTWSGTVNALNLMADLMPFESQAECKRNIVSIIDGVAGKLGNTRAV
CKKYYVHPQLLLAYENCQLDTYLQQIRDSRSRPAKGGLHNDEKVLLQFLKKQQQPRRARI
KKPVKMIA
NT seq
1107 nt
NT seq
+upstream
nt +downstream
nt
atggataatttatctgccatcattacggacccggttgcggctgcccgggctatcaaattg
cgctatgttaaagcgggtaccactggttattcccgtcagcgccatggtaaagaatttcat
tacctggatcagcatggtgagcgtatacgggatacggagactttactacgtataagaggt
ttagtattaccgcctgcctgggagcaggtatggatatgtccttatgcgaacggtcatctg
caggcaacaggaattgatgcgctgggccgtaagcagtatcgttatcatgctacctgggct
aaggtaaggaatgagactaaatacgaccggttgctacagtttggggaaaaactaccgcaa
atccgtcgccgtatacaggtctcgcttcgtaagaggacattggataaagagaaagtattg
gcaattgcgttgagtgtgatgcaggagacgcttattagggtaggtaacagtgcatatgag
aagctatatggctctcatgggttgaccactttgcgtaatcaacacgttaaaatcaacgga
aataccgcttttttccagtttaaaggtaaaaagggcgttatgcacaagattgccttaaaa
catgcctccttagcccgcttattgcaaaaaatgaaggatatacccgggcaggaacttttc
cagtattatgatgagtcgggagagcacaaggggctggactccggcgatattaatgaatac
ctgaaggagtgtgcggaagaggattttacctgtaaagattttcgcacgtggtccgggact
gttaacgctcttaatcttatggcggatctgatgccattcgagtcgcaggcggaatgtaag
cgtaatattgttagtattatagacggtgtggcgggtaagctgggtaatactagggcggtc
tgtaagaagtactatgttcatccacagcttttgctggcctacgaaaactgccaactggac
acttaccttcaacagatacgggatagcaggagccggcccgccaagggagggctgcacaac
gatgaaaaggtattgttacagttcctgaagaagcaacagcagcctcgtcgcgcgcgcata
aaaaaaccggtaaagatgatagcttag
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