Chitinophaga sp. MD30: CK934_06355
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Entry
CK934_06355 CDS
T10354
Name
(GenBank) ATP-dependent DNA helicase
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
chim Chitinophaga sp. MD30
Pathway
chim03420
Nucleotide excision repair
chim03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
chim00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
CK934_06355
03430 Mismatch repair
CK934_06355
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
chim03400
]
CK934_06355
Enzymes [BR:
chim01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
CK934_06355
DNA repair and recombination proteins [BR:
chim03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
CK934_06355
MMR (mismatch excision repair)
Other MMR factors
CK934_06355
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
Viral_helicase1
AAA_30
AAA_12
PcrA_UvrD_tudor
ResIII
AAA_11
DEAD
Motif
Other DBs
NCBI-ProteinID:
ASZ10625
LinkDB
All DBs
Position
1608531..1610864
Genome browser
AA seq
777 aa
AA seq
DB search
MKANYLDELNERQREAVAHINGPLMIVAGAGSGKTKVLTTRIAHLMRNGVDAFNILSLTF
TNKAAREMKERVERILGGSEARNLYIGTFHSVFARLLRAEAHRLGYPNDFTIYDSDDAKS
VLKTIINEQNLDDKHYKPNFVYNRISAAKNSLMSPEEYQHDYYVQQEDMRANRPMIGKLY
DMYAKRCFKNGAMDFDDLLYKMYVLLKNFPEVLHKYQHKFKYIMIDEYQDTNPAQYEIIK
LLGAVHENICVVGDDAQSIYSFRGATIENILQFEKDYEDVRVVKLEQNYRSTKSILNVAN
EVIQHNKGQIEKNLWTDNADGEKIKLIRTMTDNDEGKFVADTIAEQKLRNHYDNKDFVIL
YRTNAQSRSFEENLRRKAIPYRILGGMSFYQRKEIKDFVAYLRVTMNTQDEESIKRIINY
PVRGIGKTTIEKTVVLSNEHNITFWEVLNRAKEFGFKGGTLEAIDGFVTMIQSFQANLTK
HNAYDVAVQVGKSTNIVKELFNDKTTEGLARYENIQELLNSIKEFTETPTEDGELLDKSL
GSYLQQITLLTDADQGKDENSDVVKLMTIHAAKGLEFPVVFTVGLEETLFPSQMSVNTRE
ELEEERRLFYVAITRAKSRLWLTYANSRYRFGNLVQNEASRFLEEMPEQYIDRSYAGGGA
IRNSFGGGGGQWGSGNNMFDRMQKKTPVTQAPATGPKPAGPRPSAPAGNHVPSPGFTPDD
PATMEVGMEVEHQKFGFGTIQGLEGAPNNRIATVVFPKGGGEKKIMLNYAKLMIVKK
NT seq
2334 nt
NT seq
+upstream
nt +downstream
nt
atgaaggcaaactatttagacgagctgaatgaacggcaacgggaagcagtcgcgcatatt
aatggccccctgatgatcgtagcgggtgcgggctctggtaaaaccaaagtgctgactacc
cggattgcgcacctgatgcgtaatggggtggacgcctttaacattctgtcgctcaccttt
acgaataaggctgcccgggagatgaaggagcgtgtggagcgtatcttgggaggtagcgaa
gcgcgcaatctgtacatcggtacttttcactcggtatttgcgagattgttacgagcggag
gctcaccggttggggtatcccaatgactttaccatctatgattctgatgatgcaaagagt
gtactcaaaactatcatcaacgagcagaacctggatgacaaacattacaaacctaatttc
gtatacaaccgtatctctgctgctaagaacagtctgatgagtcctgaggaatatcagcat
gactattatgtgcagcaggaggatatgcgcgccaatcgtccgatgatcgggaagctgtat
gatatgtatgccaagcgctgttttaagaatggtgctatggactttgatgacctgttgtac
aagatgtatgtgttattaaagaatttccccgaggtgttgcataaataccagcataagttc
aagtacatcatgatcgatgagtaccaggatacgaaccctgcgcagtatgagatcatcaaa
ctgctgggggctgtgcatgagaatatctgtgtggtgggtgatgatgcgcaaagtatttac
tcattccgcggtgctactattgaaaatatcctgcagtttgaaaaagactatgaggatgtg
cgagtggtgaagctggaacagaactatcgcagtaccaaatcgatactgaatgtggccaac
gaagtgatccaacacaacaaaggccagatagagaagaatctgtggactgataatgcggat
ggggagaagatcaaactgattcgtactatgactgacaatgatgaaggcaagtttgtagct
gacaccattgctgagcagaagttgcgtaatcactatgataacaaagattttgttatcctg
taccgtacgaatgcacagagccgttcgtttgaggaaaatcttcgccggaaagcgatccct
taccgtattttgggcggtatgtctttctaccagcgtaaggagatcaaggatttcgtggct
tacctgcgggtgacgatgaatacgcaggatgaggagagcataaaacgtattatcaattac
ccggtgagagggattggtaagacgacgattgagaagacggtagtgctcagcaatgagcac
aatatcacgttttgggaggtattgaaccgtgcgaaggagtttgggttcaaaggcggtacg
ctggaagcgatagatggttttgtgacgatgatacaaagttttcaggctaacctgaccaaa
cataatgcttatgatgtagcggtacaggtgggtaagtcgactaacattgtaaaggagtta
ttcaacgataagacgacggaggggttggcccgttatgagaatatccaggagttactgaac
tctattaaggagtttacggagacaccgacggaagacggggaattgctggataagagcctg
ggttcttatttgcagcagatcacgttgctgacggatgcggaccagggtaaggatgaaaac
agtgatgtggtgaaactgatgacgatacatgcggccaagggattggagtttccggtggtg
tttacggtgggactggaggagactttattccccagccagatgtctgtgaatacgcgggag
gaattggaagaggagcgccggttgttttacgtggcgatcacccgtgcgaagtcgcgttta
tggctgacctatgcgaacagccgttaccgttttggtaacctggtgcaaaatgaggccagc
cgtttcctggaggagatgccggagcaatatattgaccgcagttatgcaggcggtggtgct
atccggaattcctttggtggtggtggcggacagtggggtagcggcaacaatatgtttgac
cgcatgcagaagaagacgcctgtaacacaagctcctgctactggccctaaacctgcgggg
cctaggccttcggcgccggccggcaaccacgtgccttcacccggttttacgcccgatgat
ccggctacgatggaagtaggcatggaggtagagcatcagaagttcggttttggtacgata
caggggctggaaggggcgcctaataaccgtattgctacggtggtgttccccaaaggcggc
ggagagaaaaagatcatgctgaactatgctaagttgatgattgtaaagaaataa
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