Chitinophaga sp. MD30: CK934_06990
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Entry
CK934_06990 CDS
T10354
Name
(GenBank) RNA-splicing ligase RtcB
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
chim Chitinophaga sp. MD30
Brite
KEGG Orthology (KO) [BR:
chim00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
chim03016
]
CK934_06990
Enzymes [BR:
chim01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
CK934_06990
Transfer RNA biogenesis [BR:
chim03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
CK934_06990
Prokaryotic type
tRNA splicing ligases
CK934_06990
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RtcB
Dak2
TFIIF_beta
Motif
Other DBs
NCBI-ProteinID:
ASZ10742
LinkDB
All DBs
Position
1758618..1760042
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AA seq
474 aa
AA seq
DB search
MKQEINGKDLLALGFQEGKVLGLALGVIAQHFATQEREEVLTKLQALVRQPENYLDDEVL
EELATKVIEAANAPVDDTIALKEEGERYAIYGADHIDPGARQQMAVAMKLPVTAGGALMA
DAHQGYGLPIGGVLATKNAIIPYGVGVDIGCRMALSIFDIPAAHFYAHKDIYQQALMAHT
KFGAGHGYHGSYRSEHVVLDRQEFRDIAVIKSLHEKAYSQLGTSGGGNHFVEWGIITFAE
RDEVLNIEAGKYLALLTHSGSRGMGATIAGYYTRLAKQLCKLPKEAANLAYLDLDSEAGQ
EYWLAMNLAGDFASACHEVIHNKLAAATGATLLAKVENHHNFAWKEVWHGEEVIVHRKGA
TPAGKGVMGIIPGSMTAPGFLVRGKGEEASLHSASHGAGRQMSRTKALQHISKEDMRAVL
AANDVTLIGSGLDEAPMAYKDINLVMAAQRDLVDIVAQFDPKIVRMADDGSAED
NT seq
1425 nt
NT seq
+upstream
nt +downstream
nt
atgaaacaggaaataaatggtaaggatctgttggcactgggattccaggaaggaaaggtg
ctggggttagcattgggggtaatcgcgcagcattttgctacgcaggagcgggaggaagta
ttgacgaagttgcaggcgttggtgaggcaaccggaaaactacctggatgacgaggtattg
gaggagctggcgacaaaggtcatagaggcagctaatgcaccggtggatgatacgatagca
ttgaaagaggaaggtgagcggtatgctatttacggggcggatcatattgatccaggtgcc
cgtcagcagatggcggtggcgatgaagctgccggtgacggcagggggcgctttgatggcg
gatgcacatcagggatatggtttgcctatcggaggggtgttggctactaaaaatgccatc
attccttatggggtaggggtcgatattggatgcaggatggcgttgtccatctttgatata
ccggctgctcatttctatgcgcataaggatatttatcagcaggcattgatggcgcatact
aagtttggtgctggtcatggttatcatgggagctaccggtccgagcatgttgtattggat
cgtcaggagttcagggatattgctgtaataaagtccctgcatgagaaggcttattctcag
ctggggacttccggtggggggaatcactttgtggaatgggggatcatcacttttgcggag
cgggacgaggtgttgaatattgaggccgggaaatacctggcgttattgacgcactccgga
tcgcgtgggatgggggcgacgattgcgggttactatacccgcctggctaaacagctgtgt
aagttgccaaaagaagcggctaacctggcttacctggacctggattcggaggctggccag
gagtattggctggcgatgaacctggcgggtgattttgcttctgcctgtcatgaggtgatc
cataacaagctggctgcggctactggcgctacgctattggcgaaggtggaaaaccatcac
aacttcgcctggaaggaggtctggcatggtgaagaggtgattgtacaccggaaaggggct
acgccggcaggtaaaggtgtgatgggtattattccgggctccatgactgcgccggggttc
ctggtacgcggtaagggggaggaggcgtcgttgcactctgcttcgcatggtgccggccgg
cagatgagccgtactaaagcattgcagcatatatccaaagaggatatgcgggctgtactg
gcggcaaatgatgtgacattgatcggttccggattggacgaagcgccaatggcatataag
gatattaatctggtaatggctgcacagcgggacctagtagatattgttgcgcaatttgat
cctaaaatagtccgtatggcggacgatggtagcgcagaagattaa
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