KEGG   Chitinophaga sp. MD30: CK934_11240
Entry
CK934_11240       CDS       T10354                                 
Name
(GenBank) RNA polymerase subunit sigma-70
  KO
K23514  RNA polymerase sigma-19 factor, ECF subfamily
Organism
chim  Chitinophaga sp. MD30
Pathway
chim02020  Two-component system
Brite
KEGG Orthology (KO) [BR:chim00001]
 09130 Environmental Information Processing
  09132 Signal transduction
   02020 Two-component system
    CK934_11240
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03021 Transcription machinery [BR:chim03021]
    CK934_11240
Transcription machinery [BR:chim03021]
 Prokaryotic type
  Bacterial type
   RNA polymerase
    Sigma factors
     CK934_11240
SSDB
Motif
Pfam: Sigma70_r4_2 Sigma70_r4 Sigma70_r2 GerE Sigma70_ECF HTH_11 HTH_Tnp_ISL3 HTH_23 HTH_DeoR HTH_40 SeqA_N HTH_24 HTH_20 MarR_2 HTH_50 HTH_17 HTH_Tnp_4 HTH_AsnC-type SpoIIID HTH_30 HTH_10 HTH_5 HTH_ParB WHD_3rd_SelB DUF6456 PF0610-like_N HTH_AraC HTH_28 HTH_65 Homeodomain DUF6362 HTH_29 DUF3489 wHTH_Par rve
Other DBs
NCBI-ProteinID: ASZ11489
LinkDB
Position
complement(2766621..2767211)
AA seq 196 aa
MYSSYTDDQLLCLLKENSVAAFNSIYERYSKQLYLYIFSKTDTGETAKDILQELFTILWE
KRKTLTISDSLKGYLYQAARHKIIDLYRKNSNYRKYLQQLIEHFDTQPHAINETLDYKVR
TQELFEAINHLPERMKQIFMMSRLEHLTVEQIAQQLGLSQQTVKNQITKALKILRTHYAK
SDVILLILATWALDKL
NT seq 591 nt   +upstreamnt  +downstreamnt
atgtacagcagttatacagatgaccaattactatgcttgctaaaagagaatagtgtagct
gctttcaattctatttatgaacgctacagtaagcagctgtacctttacatcttcagcaaa
accgatacaggagaaactgcaaaggacatcctgcaggagttgtttactatactatgggag
aaacgtaagacgttgacgatcagcgattctctgaaaggatacctctatcaggctgcccgg
cacaagattatagacctgtaccgtaagaacagtaactaccggaaatacctgcagcaactg
atcgaacactttgatacacagccacatgctatcaacgaaaccctggactacaaggtaagg
acccaggaattgtttgaagctatcaaccatctgccggaacgaatgaaacagatctttatg
atgagccggctggagcaccttaccgtagagcagatcgcccagcagttgggtttatcacag
caaacggtaaaaaatcagatcaccaaagcactgaagatattgcgtacccactatgccaaa
tcagatgtgatattactgatactggcgacctgggcactggataaattataa

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