Chitinophaga sp. MD30: CK934_11680
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Entry
CK934_11680 CDS
T10354
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
chim Chitinophaga sp. MD30
Brite
KEGG Orthology (KO) [BR:
chim00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
chim03032
]
CK934_11680
03400 DNA repair and recombination proteins [BR:
chim03400
]
CK934_11680
Enzymes [BR:
chim01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
CK934_11680
DNA replication proteins [BR:
chim03032
]
Prokaryotic type
DNA Topoisomerases
CK934_11680
DNA repair and recombination proteins [BR:
chim03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
CK934_11680
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
SHOCT-like_DUF2089-C
Toprim_4
Motif
Other DBs
NCBI-ProteinID:
ASZ11571
UniProt:
A0A249SVT6
LinkDB
All DBs
Position
complement(2872295..2874649)
Genome browser
AA seq
784 aa
AA seq
DB search
MAKNLVIVESPAKAKTIEKILGKDFEVKSCFGHIRDLEKDDMGIDIQNNFKPKYIIPDDK
EKVVKELKKLAKDTDEVWLATDEDREGEAISWHLCEVLGLDPENTKRIVFHEITKPAIEK
AVQQPRLLDMNLVNAQQARRILDRIVGFELSPVLWRKMSMRNSLSAGRVQSVAVRLIVER
EREINAFTAVSSFKVEAFFIAKDINGKPITFKAEGPTRFKTVEDAEKFLQQCVGAAYSVK
DIQIKPGKKSPAAPFTTSTLQQEASRKLGYSVSKTMLLAQKLYESGKITYMRTDSVNLSE
TAQTDIKNAIYNNYGEKYHQHRKFKNKNESAQEAHEAIRPTYMENATVEDSDTKKLYELI
WKRTIASQMSDAELEKTIAKIDISTNHEELTASGEVLKFDGFLKIYMEGRDEEDENDEDS
QEGVLPPLQVKQALELKEMKANERFTRPAPRYTEASLVKKLEELGIGRPSTYAPTITTVQ
KRNYVEKRDKEGVKRDLRILTLKNDKISQHTDSENTGAEKSKLFPTDLGMIVTDFLNQYF
DQVMDYKFTAKIEEEFDEIAHGKKIWNKMLNEFYQPFHKDVENTLENAERVKGERLLGEE
AETGKPIVARMGRYGPMIQIGKVDDEEKPRFAKLKATQSIETITLEEAMELFRLPRNLGL
FEGTDVVINIGRFGPYAQHDKKFYSLKKEMDPYTVELDEIAPLIVEKRTAKDERTIKVFE
KEKIQILKGPYGPYIKQGLRNFKIPKERIDHAAEITVEEAKAIIEDVKANPPKKKAPARK
KKAE
NT seq
2355 nt
NT seq
+upstream
nt +downstream
nt
atggcaaaaaaccttgttatagttgagtcacctgcaaaggctaagaccatagaaaaaata
ttgggcaaagactttgaagtcaaatcctgcttcgggcatatccgtgacctggagaaggat
gacatgggtattgacattcagaacaacttcaagccaaaatatattatccctgacgacaaa
gaaaaggtggtaaaggaactcaaaaaactggcgaaagataccgatgaggtatggctcgca
acggatgaggaccgggaaggagaagccatctcatggcacctctgcgaggtactcggcctc
gacccggaaaataccaaacgtatcgttttccatgagatcaccaaacctgccatcgaaaaa
gccgtgcagcaaccccgcctcctggatatgaacctggtcaacgcccaacaagccagacgt
atcctcgaccgtatcgtaggttttgaactatcccccgtcctatggcgcaaaatgagcatg
cgcaactccttgtccgccggtcgcgtacaatccgtagccgttcgccttatcgtcgaacgc
gaacgcgagatcaacgccttcaccgccgtgagctcatttaaagtagaagccttctttatc
gccaaagatatcaacggtaagcccatcaccttcaaagccgaagggcccacccgcttcaaa
acagtagaagatgcggaaaagttcctccagcaatgtgttggagcagcctactccgtaaaa
gacatacagatcaaaccgggcaaaaaatccccggcagcccctttcaccacttccaccctc
cagcaggaagccagccgcaaactcggctacagcgtttccaaaaccatgctgctggcacag
aaactctatgaaagcggtaagatcacctacatgcgtaccgactcggtaaacctctccgag
accgcgcaaaccgatatcaaaaacgccatatataataactatggcgaaaaatatcaccag
catcgtaagttcaagaataaaaacgaatccgctcaggaagcacacgaggccatccgcccc
acctacatggaaaatgctaccgtagaagacagcgataccaaaaaactctacgaactgatc
tggaaacgtaccatcgctagccagatgagcgatgccgaactggaaaagaccatcgccaaa
atagatatctctaccaaccacgaagaactcaccgccagcggtgaagtcctcaaattcgat
ggcttcctcaaaatatacatggaaggccgcgacgaagaagacgaaaatgacgaagatagc
caggaaggcgttttacctcccctgcaggtaaaacaagccctggaactcaaagagatgaaa
gccaacgaacgatttacccgccccgcccctcgttatacagaggccagcctggtaaagaaa
ctcgaagagctaggcatcggtcgcccatccacctacgcgcctactatcaccaccgttcaa
aaacgtaactacgtagaaaaacgcgacaaagagggcgtaaaaagagacctgcgcatcctc
accctcaaaaacgacaagatctctcaacataccgattccgaaaataccggtgccgaaaag
tccaaactcttccccaccgacctcggaatgatcgtcaccgacttcctcaaccaatacttc
gaccaggtaatggactataagttcaccgccaaaatcgaagaagaattcgatgaaatagca
catggcaaaaagatctggaataaaatgctcaacgaattctatcagcccttccataaagat
gtggaaaacaccctggagaatgccgaaagagtaaaaggagaacgcctcctcggtgaagaa
gccgaaacaggcaaacccatcgtagcccgcatgggccgctatggccccatgatccagatc
ggtaaagtggacgacgaggaaaaaccacgcttcgccaagctgaaagctacccagagcata
gaaaccatcaccctcgaagaggccatggaactattccgcctgccacgcaacctcggcttg
ttcgaaggcaccgacgtcgtaatcaacatcggccgcttcggcccgtacgcccaacacgat
aaaaaattctattccctcaaaaaggaaatggacccctacacagtagaactcgacgaaata
gctccgctgatcgtagaaaaacgtacggccaaagacgaacgtaccatcaaagtattcgaa
aaagaaaaaatacaaatccttaaaggtccatatggcccctacatcaaacagggcctcagg
aacttcaaaataccaaaggaaagaatagatcacgcagcagaaataacggtagaagaagcc
aaagccatcatagaagatgtcaaagccaacccaccaaagaaaaaagcaccggcccgcaag
aaaaaagcggaataa
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