KEGG   Chitinophaga sp. MD30: CK934_15705
Entry
CK934_15705       CDS       T10354                                 
Name
(GenBank) DNA-formamidopyrimidine glycosylase
  KO
K10563  formamidopyrimidine-DNA glycosylase [EC:3.2.2.23 4.2.99.18]
Organism
chim  Chitinophaga sp. MD30
Pathway
chim03410  Base excision repair
Brite
KEGG Orthology (KO) [BR:chim00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03410 Base excision repair
    CK934_15705
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:chim03400]
    CK934_15705
Enzymes [BR:chim01000]
 3. Hydrolases
  3.2  Glycosylases
   3.2.2  Hydrolysing N-glycosyl compounds
    3.2.2.23  DNA-formamidopyrimidine glycosylase
     CK934_15705
 4. Lyases
  4.2  Carbon-oxygen lyases
   4.2.99  Other carbon-oxygen lyases
    4.2.99.18  DNA-(apurinic or apyrimidinic site) lyase
     CK934_15705
DNA repair and recombination proteins [BR:chim03400]
 Prokaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    DNA glycosylases
     CK934_15705
SSDB
Motif
Pfam: Fapy_DNA_glyco H2TH NFACT_N Ribosomal_S13
Other DBs
NCBI-ProteinID: ASZ12302
UniProt: A0A249SXC9
LinkDB
Position
complement(3914326..3915105)
AA seq 259 aa
MPELPDLQVFSHNLQKLVKGKKISGVQVVKAKKLNVSAKQLEQALAGQAVQSVYREGKEL
YFAIGKQHVLAMHLMLHGKLLYGAAGGGHKHTVLELVFVDDTALTLTDYSSMAKPTLDPE
EPDAPDALSEAGGVKYLKAQLPQKRIHIKNFLLDQQLIRGIGNAYADEILWDARISPFSI
CNKLPADKISQLAKSIKKVLAAAEKKILASHPDIISGEVRDFMAVHHSKKAQSPTGADIH
HKVVNSRKTYYTDEQVLFE
NT seq 780 nt   +upstreamnt  +downstreamnt
atgccagaattaccagaccttcaggtgtttagtcataacctgcaaaagctagttaagggg
aaaaagataagtggggtacaagtagtgaaggctaaaaagcttaatgtcagtgccaaacag
ttagagcaggcgttggcagggcaggctgtacaatctgtataccgggaaggtaaggagtta
tattttgctatcggtaagcaacatgtgcttgcgatgcacctgatgcttcacggcaagctc
ttgtatggggctgctggcggggggcataagcatacggtgctggagctggtatttgtggat
gatacggcattgacccttacggattatagtagtatggcgaagcctacgcttgatccggag
gaacctgatgctcccgatgccttgtcggaggcgggaggcgtcaaatacctgaaggcacag
ctaccgcagaagcgtatccatattaagaactttctgctggatcagcagctgatccggggc
ataggcaatgcctatgcggatgagatattatgggatgcgcgtatctctcctttttctatt
tgtaataagttacccgcggataaaatatcgcaattggcgaagtcaattaaaaaggtgttg
gcggcggcggagaaaaagatactggcatcgcatccggatattattagcggggaggtcagg
gattttatggcggtgcatcattccaaaaaagcgcaaagtccgacaggggcggacattcat
cataaggtggttaattcccgtaaaacatattatacggatgagcaagttctttttgagtag

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